KEGG   Candidatus Vesicomyosocius okutanii: COSY_0735
Entry
COSY_0735         CDS       T00530                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
vok  Candidatus Vesicomyosocius okutanii
Pathway
vok03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vok00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    COSY_0735 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vok03021]
    COSY_0735 (rpoC)
   03400 DNA repair and recombination proteins [BR:vok03400]
    COSY_0735 (rpoC)
Enzymes [BR:vok01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     COSY_0735 (rpoC)
Transcription machinery [BR:vok03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     COSY_0735 (rpoC)
DNA repair and recombination proteins [BR:vok03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      COSY_0735 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Peptidase_M23 DUF6571 zinc-ribbon_6
Other DBs
NCBI-ProteinID: BAF61847
UniProt: A5CW24
Position
complement(774538..778719)
AA seq 1393 aa
MRDLLKIHKLEQKEQDFDAIRVGLASPEKIRSWSYGEVKKPETINYRTFKPEREGLFCAK
VFGPMKDFECLCGKYKRMKFRNVVCEKCGVEVTYSKVRRERMGHIELAAPVAHIWYLKSL
PSRLGLLMDMTLKDIERVLYFEAFLVTDPGSTPLVHKQLLTEEMYFDALDEYGDDEFEAK
MGAEAIQDVLSDMKLEVEAANLREDSLNTKSQTKLKKYNKRLKLVNSLIQSGNKPEWMVL
KVLPILPSDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELDAPEIIVRNEKRML
QEAVDSLIDNGRRGRAVMGNNRRPLKSISDMIKGKQGRFRQNLLGKRVDYSGRSVIVCGP
YLKLHQCGLPKKMALELFKPFIYNRLQTKGLASTIKAAKKMVESESPEVWDILERVVHQH
PVLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCGAFNADFDGDQMAVHVPLSEEAQLE
ARTLMLASNNVLHLASGEPIIVPSQDVILGLYYMTREMINQKGEGLIFVNATEALNAYES
DSVTLHAKVKLRIQDYHKVNGKFEPSAKRIVDTTVGRAIFSRILPNGLSFNLINEAISKK
VVSNLIHVCYRTQELKQTVMFADQMMYMGFQYSTKSGISFCSNDMIIPDSKAKMIEQAEI
QVKDIQEQFSKGVVTDGERYNKVIDIWSRTSEKVAKAMMDEIGFENFTDVDGKIQKLASF
NSVYMMADSGARGSPAQMRQLSGMRGLMAKPDGSIIETPITSNFREGLNNMQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVGQDLVITENDCGTDNGLIMKAVIDGGNIVQTLGTAT
LGRVTAEDVLMPDSIEIFLEKGHLVSLDDSDKINELGIESIKVRSSITCDTRYGVCSSCY
GNDMARGHKIGVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASASTAVSSINVNTDGIAH
FENLKSITNENNDLVVISRSSEVTIRNNKGQEVERYKIPYGAIVHVQEGGAVTAKDKISD
WDPHTHPIISEQAGRVIFVDFVEGMTVNKNTDPLTGLTFFEMIDEAERSTAAKGLKPLIK
MVEENDSEVVLSTHYLPSTVKINLDDNQVIAAGGVLAKIPKDLSKTSDITGGLPRVADLF
EARKAKDHSILAEATGVISFGNSTKSKDRLIITSSEGKATEMMIHKWSQINVFDGETIEK
GDVISDGPSNPHDILRLLGVEALANYVVREVQNVYRLQGVNISDKHIEVIVKQMLRKVEI
LDAGDSSFVNGETAEYGRVIEMNYQLEAQGKDLINYQRLLMGITKASLATESFISAASFQ
ETTRVLTEASTTGRVDTLQGLKENVIVGRLIPAGTGFKHHQVRRAQYVESITTQTVDAQQ
ALSDQLKEAEEQT
NT seq 4182 nt   +upstreamnt  +downstreamnt
atgagagatttattaaaaattcataagttagagcaaaaagaacaagattttgatgcaatt
agagttggactagcttctcctgagaagattcgttcatggtcatatggcgaagttaaaaag
cctgaaactattaattatcgtacatttaagcctgaaagagaaggtttattttgtgctaag
gtatttggaccaatgaaagactttgaatgtttgtgtggtaagtacaagcgtatgaaattt
cgcaatgttgtgtgtgaaaaatgtggggttgaagtaacatattctaaggttcgtcgtgaa
cgaatgggtcatattgaattagcagcaccagtcgcgcatatttggtatttaaaatctttg
ccttcacgtttggggttattgatggatatgacacttaaggatattgaacgtgtactttat
tttgaagcatttttggtgactgatccgggctcaacacctcttgttcataagcaactatta
actgaagagatgtattttgacgcattagatgaatatggtgatgatgagtttgaagcaaaa
atgggcgcggaagccattcaagatgttttgtctgatatgaaacttgaggttgaggcggct
aatttacgtgaagatagtttaaatacaaaaagccaaactaagcttaaaaagtataacaaa
cgtcttaaactagttaattcattaatccaatctggcaataaacctgaatggatggtatta
aaggtattaccaattcttccatctgatttacgtcctttggtgccattagatggtggtcgt
tttgcaacttcagaccttaatgacttatatcgtcgcgtaattaaccgtaataatcgctta
gcacgtttattagagctggatgctcctgaaattattgttcgcaatgaaaagcgtatgttg
caagaagcggtagactcgttaattgataatggtcgtcgtggtcgtgctgtgatggggaat
aatcgtcgtcctttgaagtctatatcagatatgattaagggtaagcaagggcgtttccgt
caaaacttattaggcaaacgggttgactattcaggccgttcagtgattgtttgtggacct
taccttaagttacatcagtgtggtctacctaagaaaatggcattagaattatttaaaccg
tttatttataataggttacagactaaaggtttagcctcaactattaaagctgcaaagaaa
atggttgaaagcgaatcaccagaagtgtgggatattttagagagagttgtgcatcaacat
ccagttttactaaatcgtgccccaacattacaccgtttgggtattcaagcatttgagcca
ttactaattgaaggtaaagctattcagttacatccacttgtgtgtggtgcatttaatgct
gattttgatggtgatcaaatggcagtacacgtgcctttatctgaagaggcgcaattagaa
gcaagaacattaatgttggcttctaataatgtattacatcttgctagtggtgaacctatt
attgtgccatcgcaagatgttatcttaggtctttattatatgactcgtgagatgattaat
caaaaaggtgagggtctaatttttgtaaatgcaactgaagcacttaatgcttatgagtct
gacagtgttactttgcatgcaaaggttaaactacgtatccaagattatcataaagttaac
ggtaagtttgaacccagtgctaaacgtattgttgatactacagtgggtcgtgcgattttt
tcaagaattttgccaaatggtttgtcgtttaatttaattaatgaggctattagtaaaaaa
gtagtttctaatctaattcatgtttgttatcgcactcaagaattaaagcaaacggttatg
tttgctgaccaaatgatgtatatgggttttcaatattcaactaaatcaggtatttcattt
tgttcaaatgatatgattattccagattctaaagctaaaatgatcgaacaagcagaaatc
caagttaaagatattcaagagcaattttccaaaggtgttgtgactgatggcgaacgttat
aataaggtgattgatatttggtcacgtacttctgaaaaagtggcaaaagccatgatggat
gaaattggttttgaaaattttaccgatgttgatggcaagattcagaaacttgcctcgttt
aattcggtttacatgatggctgattcaggtgctagaggttctcctgcacaaatgcgtcaa
ttatcaggtatgcgtggattaatggcaaagccagatgggtcaattattgaaacaccaatt
acatccaattttcgtgaaggcttaaacaatatgcaatactttatttctacgcacggtgca
cgtaaaggcttggctgatacagccctcaaaacagcaaattctggttatttgactagacgt
ttggtagatgttggacaagatttggttattactgaaaacgactgtggtactgacaatggt
ctgattatgaaggcagtaattgatggtggtaatattgtacaaaccctgggtacagcaacc
ttaggtcgagtaacagctgaagatgtgttaatgcctgattcaatagagatatttttagaa
aagggtcatttagtatctttggatgattcagataagatcaatgaattaggcattgaatcg
attaaagtacgttcttctattacttgcgatacacgttatggtgtgtgctcatcatgctat
ggtaatgatatggcacgtggtcataaaattggtgtaggtgaggcgattggtgttattgca
gcacaatctattggtgagccaggtacacagttaactatgcgtactttccatattggcggt
gctgcatctgcttctactgcagtcagtagtattaatgttaatactgatggtattgcacat
tttgaaaatctaaaatcaatcaccaatgaaaataatgatttagtggttatttctcgttct
tctgaagtgacgattcgtaataacaagggtcaagaggttgaacgttataaaattccttat
ggtgcaattgtacatgtacaagaaggtggtgcagttacagcaaaagataagatttctgat
tgggaccctcatacacatcctattatttctgagcaagcaggtcgcgttatttttgtagat
tttgttgagggaatgacagttaataaaaacactgatccattgacaggtttaacgttcttt
gagatgattgatgaagctgaaagatcaacagcagcaaaggggttaaagccgttaattaaa
atggttgaggaaaatgattctgaagttgtattatcaacacattatctaccatcgactgtt
aagattaatctagatgataatcaagtgattgcagcaggtggagtattggctaaaatccct
aaagatttgtctaaaacaagtgatattacaggtggtctgccacgtgttgctgatttattt
gaagcgcgtaaggctaaagatcattctattcttgcagaggcaactggtgttattagtttt
ggcaattctactaaatctaaagatcgtttaattattactagttcagaaggtaaagctact
gaaatgatgatccataaatggagtcaaattaatgtatttgatggtgagacgattgaaaaa
ggtgatgtaatttcagacggtccatctaatccgcatgatattttacgcctattaggcgtt
gaagcattggctaattatgttgttagagaagtacaaaatgtatatcgtttacaaggtgtt
aatatttctgacaagcatattgaggtgattgttaaacaaatgttacgtaaagttgaaatc
cttgatgcaggagattcatcatttgttaatggtgaaactgctgaatatggacgagtgatt
gagatgaactatcaattagaagcacagggaaaggatttaattaattatcaaaggttgtta
atgggtattactaaagcatctttggcaactgaatcgtttatttctgctgcctcgtttcaa
gaaacaactcgtgttttgacagaagcttcaacaacaggacgtgtagatacactccaaggt
ttgaaagagaatgtgattgtgggtcgattgattccagcaggtacaggctttaaacatcat
caagtacgtcgtgctcaatatgttgaaagtattactacgcaaacagttgatgcacaacaa
gcattatctgatcaattaaaggaagcagaggaacaaacgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (34)   

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