KEGG   Vibrio parahaemolyticus RIMD 2210633: VPA1112
Entry
VPA1112           CDS       T00120                                 
Name
(GenBank) putative choline dehydrogenase
  KO
K00108  choline dehydrogenase [EC:1.1.99.1]
Organism
vpa  Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa00260  Glycine, serine and threonine metabolism
vpa01100  Metabolic pathways
Module
vpa_M00555  Betaine biosynthesis, choline => betaine
Brite
KEGG Orthology (KO) [BR:vpa00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    VPA1112
Enzymes [BR:vpa01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.99  With unknown physiological acceptors
    1.1.99.1  choline dehydrogenase
     VPA1112
SSDB
Motif
Pfam: GMC_oxred_N GMC_oxred_C NAD_binding_8 FAD_binding_2 Lycopene_cycl DAO Pyr_redox_2 Pyr_redox_3 ApbA TrkA_N
Other DBs
NCBI-ProteinID: BAC62455
UniProt: Q87H53
Position
2:complement(1172727..1174472)
AA seq 581 aa
MKQHYDYIIVGAGSAGCVLADRLTESGQHSVLLLEAGGTDKSIFIQMPTALSYPMNTEKY
AWQFETVQEDGLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDQWEEEGAKGWNYQAC
LPYFRKAESWVGGADDYRGDSGPLGTCSGNDMKLNPLYEAFIEAGKEAGYPETDDYNGFQ
QEGFGPMHMTVDKGVRASTSNAYLSRAKKRKNFTLMKRVTVRRVLLEEAGSDEKGLEETG
LQGKKAVGVEFEKAGSIQQCFAKNEVISSAGSIGSVQLLQLSGIGPKDVLEKAGIELKHQ
LEGVGKNLQDHLEVYFQYHCKQPITLNSKLGLVSKGLIGTEWILTRKGLGATNHFESCAF
IRSREGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGSVEVVSSNPNDKP
KIEFNYISTEQDKQDWRDCIRLTREILNQPAMDEFRGDEIQPGLHITTDEQIDEWVKQNV
ESAYHPSCSCKMGADDDPLAVLDEQCQVRGIQGLRVVDSSIFPTIPNGNLNAPTIMVAER
AADMILGNALEKANNTPVWIAPNWQEMQRMHPPKRDLESIS
NT seq 1746 nt   +upstreamnt  +downstreamnt
atgaaacaacactacgattatattatcgtcggtgcgggttcggccggctgtgtgttagcg
gatcgcttgactgagagcggccagcactcagtattattactggaagcgggtggtacggat
aagagcatttttatccaaatgccaacagcactttcgtacccaatgaatactgaaaaatac
gcttggcagttcgagaccgtacaagaagatggtcttgacggacgccagcttcactgtcct
cgcggtaaagttcttggtggtagctcttctatcaacggcatggtttacgtacgtggccat
gcttgcgacttcgaccagtgggaggaagagggagcgaaaggctggaattaccaggcatgc
ttaccgtacttccgcaaagctgaatcttgggtcggcggtgctgatgattaccgcggtgac
agtggccctctaggtacatgtagtggcaatgacatgaagctgaacccgttgtatgaagcc
tttattgaggctggtaaagaggcgggctatccagaaactgacgattacaacggtttccag
caagaaggcttcggtccgatgcacatgacggttgataaaggcgtacgtgcttcaacctct
aatgcatacttaagccgtgctaaaaagcgcaagaacttcacgctcatgaagcgagtgact
gtgcgtcgtgtcttgcttgaagaagcagggagcgatgaaaaagggcttgaagagacaggg
ctacaaggcaagaaagcggtcggcgttgaatttgagaaagcaggttcaatacagcagtgt
ttcgcgaaaaatgaagtcatttctagtgcaggctcaatcggctcggtacagctacttcaa
ctttccggtattggtcctaaagatgtactggaaaaagcgggcatcgagttgaaacaccag
ttggaaggggtaggtaaaaacctgcaagaccatctggaagtgtacttccaataccactgt
aagcagccgattacactgaacagtaaactaggcttggtgagcaaagggctaatcggtacc
gagtggattctgactcgaaaaggtcttggcgcaaccaaccattttgaatcgtgtgcgttt
attcgctcgcgtgaagggctgaagtggccaaatattcaatatcacttcttgcctgcagca
atgcgttatgacggacaagcagcatttgatggccatggtttccaggtacacgtcggcccg
aataaaccagagagccgtggctcggtggaagtggtctcttctaacccgaatgataagcca
aagattgagtttaactacatctcgaccgagcaagataaacaggactggcgtgactgtatt
cgtctgacacgcgaaattctcaatcaacctgcgatggatgagttccgtggcgatgagatc
caaccaggtcttcacattacaaccgacgagcaaattgatgagtgggttaagcaaaatgtt
gagagtgcttatcatccttcatgtagctgcaaaatgggtgcagacgatgatccgctagct
gtactggatgagcagtgtcaggtacgcggcatccagggtttgcgtgttgtggactcgtcg
attttcccaaccattccaaatggtaacttgaacgcgccaaccatcatggttgcagaacgg
gctgcggacatgatcttgggtaacgcactagaaaaagcaaataacactccggtttggatt
gcaccgaactggcaagagatgcagcgaatgcatccaccgaaaagagacttggaatcgatc
tcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (26)   

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