KEGG   Vibrio parahaemolyticus BB22OP: VPBB_2168
Entry
VPBB_2168         CDS       T02409                                 
Name
(GenBank) RecD-like DNA helicase YrrC
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
vpb  Vibrio parahaemolyticus BB22OP
Pathway
vpb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vpb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    VPBB_2168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpb03400]
    VPBB_2168
Enzymes [BR:vpb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     VPBB_2168
DNA repair and recombination proteins [BR:vpb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     VPBB_2168
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_4 SH3_13 AAA_11 Viral_helicase1 AAA_22 UvrD-helicase Helicase_RecD AAA_16 PIF1 nSTAND3 PhoH RsgA_GTPase AAA_14 T2SSE AAA_28 SLFN-g3_helicase NTPase_1 AAA
Other DBs
NCBI-ProteinID: AGB10631
Position
1:complement(2409960..2412065)
AA seq 701 aa
MNTAIHEDQMRVTSIPYSTRGCVIFSGVPLAKDSHRTNSGKYYYVTIKADPDSIPVHPAL
GQHWSVKGIRSIKAIKTGDYVMQQHTYESPSYVECSLPDTGEQLIRFIAKENDFKGIGES
KARALWQLLGADFHDTLTNDTPESRERLISILSDDSVDALFKGYAKYKNLAHCNWMSEHN
IPASVQQRLLKHHGEASIDIIKSNPYSLIGFGLSFGVVEDIIKATDFKSDLTQTDPRRLS
AALEMAIRKEIEKGHTYTTNSQVRPYLNKLLKEKELVAKAFKAGHDKAQYILNPDTGTYH
PTAQLLMESVVAKRLKKLAKCNNLYDENANAAYCSAVSELPYELTSKQIEAVTTCLDNSV
SCITGGAGTGKTTVLRTALRAYHQMGFEIHAVALSGRAAMRLHESIGFVTSTIARLLREN
PIEPSVDKPNYLLVIDEASMIDLPTMYRLVNHTHPSVRLMFIGDPDQLPPIGCGKVLADI
VEAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVVPDQLSMGSIHFHETSKEDIAKVCCE
LYKQHPENSRVMAPTKALVKDINQLIQEAVNPSKDALEFQINGDKFFLPLRLNDAVLFTQ
NHYEIGVQNGSLGTLISVKSTGESYGEVELDTGEKVEVTQSVLDCMELGYAITLHKDQPP
GHNSRASSLPCKKAGYLIELGSIRRLRGQKVKFILLAVVMI
NT seq 2106 nt   +upstreamnt  +downstreamnt
atgaatacagcaatacatgaagatcagatgcgcgtgaccagcatcccgtatagcactagg
ggatgtgtgattttcagcggtgtaccgctggcgaaagactctcacagaactaatagcggc
aagtactactacgtcaccataaaagccgaccctgacagcattcccgtgcacccagcactc
ggccaacattggtcagttaaggggattcgctcaataaaagccattaaaactggtgattat
gtgatgcagcagcatacctatgagtcacctagttatgttgagtgctctctccccgacacg
ggcgagcaactaatccgttttatcgcaaaagaaaatgacttcaaaggtattggtgaaagc
aaagcgagggcgctctggcagctattaggtgcggattttcatgatacattgacgaatgac
actcctgagtccagagagcgcctgatatcgattctgagtgacgattctgtggacgccctt
tttaagggctacgccaaatacaaaaatctggcacattgcaactggatgagcgaacacaac
atccccgccagtgtgcagcaacggctgctcaaacatcatggagaagcctccatcgatatt
atcaagagtaacccttacagcctcattggctttggtctttcattcggtgtcgttgaagac
attattaaagcaacggattttaagagcgatttgacacaaactgatccaaggagactgagc
gccgcgctagaaatggcgattcgcaaggaaatagaaaaaggtcatacttatacgactaat
tcgcaggtgcgaccctacctgaacaaactgctcaaagaaaaagagttggtcgcaaaggca
ttcaaggcaggtcatgataaagctcaatacattctgaaccccgacacaggaacctatcat
ccaaccgcccaattgctcatggagagtgttgttgcaaagcggctcaaaaaactggctaag
tgcaacaacctgtatgacgaaaacgctaatgccgcctactgctcggctgtttcagaactt
ccttatgaattaacctcaaagcaaattgaagccgtaacaacgtgtctagacaattcggta
agctgcattacaggcggtgcaggaacaggcaagacaacggtacttagaacggctctcagg
gcttaccatcaaatgggttttgaaattcacgccgtcgcgctcagtggtcgtgctgcaatg
aggctccatgagtccatcggttttgttacctcaaccattgccagattgctgcgtgaaaac
cctattgaacccagtgtagataaaccaaattacctactggtgattgatgaggcaagtatg
attgatttaccaaccatgtatcgccttgtcaatcacactcacccttcagtacgattgatg
ttcattggcgatcccgatcagctcccaccgattggctgcggtaaagtgctagcagatatc
gttgaagcaaaaacggtcgccaataccatgctagatattgtcaagagacaagaaggttca
acgggcattcctgaatactccaagctcatcaatcaaggtgtggtgcctgaccaattaagc
atgggttctatacactttcacgaaaccagtaaagaagacatagccaaagtctgttgcgag
ctttacaagcagcaccctgaaaatagtcgtgtaatggctccaactaaagcacttgttaag
gacatcaatcagctaatacaagaagctgtcaacccgagcaaagatgctctggaattccaa
atcaatggagataaattttttttgccacttcgcttgaatgatgcggttctattcacgcaa
aatcattatgagataggcgtccaaaatggctctcttggtacacttatcagcgtgaaatcc
actggcgaaagctatggtgaagtggaacttgatactggtgagaaggtcgaggtgacgcaa
tctgtcctagattgcatggagctgggctatgcaatcaccttgcacaaagatcaacccccg
ggtcacaattcccgcgcatcatcattgccctgcaaaaaggcaggatacttgatagagctt
ggctctatacggcgattacgagggcagaaagtgaaattcatattgttggcagtagtgatg
atatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (20)   
   Pfam (20)   
All databases (29)   

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