KEGG T02409: VPBB

Vibrio parahaemolyticus BB22OP: VPBB_2168

Entry

VPBB_2168 CDS T02409

Definition

RecD-like DNA helicase YrrC

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

vpb Vibrio parahaemolyticus BB22OP

Pathway

vpb03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:vpb03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 AAA_19 AAA_11 Helicase_RecD Viral_helicase1 AAA_22 PhoH DUF258 PIF1 UvrD-helicase AAA_14 AAA_16 AAA_28 NTPase_1 T2SE DUF2075

Other DBs

NCBI-GI:

433658426

NCBI-GeneID:

14371025

UniProt:

L0HYE2

Position

1:complement(2409960..2412065)

AA seq 701 aa
MNTAIHEDQMRVTSIPYSTRGCVIFSGVPLAKDSHRTNSGKYYYVTIKADPDSIPVHPAL
GQHWSVKGIRSIKAIKTGDYVMQQHTYESPSYVECSLPDTGEQLIRFIAKENDFKGIGES
KARALWQLLGADFHDTLTNDTPESRERLISILSDDSVDALFKGYAKYKNLAHCNWMSEHN
IPASVQQRLLKHHGEASIDIIKSNPYSLIGFGLSFGVVEDIIKATDFKSDLTQTDPRRLS
AALEMAIRKEIEKGHTYTTNSQVRPYLNKLLKEKELVAKAFKAGHDKAQYILNPDTGTYH
PTAQLLMESVVAKRLKKLAKCNNLYDENANAAYCSAVSELPYELTSKQIEAVTTCLDNSV
SCITGGAGTGKTTVLRTALRAYHQMGFEIHAVALSGRAAMRLHESIGFVTSTIARLLREN
PIEPSVDKPNYLLVIDEASMIDLPTMYRLVNHTHPSVRLMFIGDPDQLPPIGCGKVLADI
VEAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVVPDQLSMGSIHFHETSKEDIAKVCCE
LYKQHPENSRVMAPTKALVKDINQLIQEAVNPSKDALEFQINGDKFFLPLRLNDAVLFTQ
NHYEIGVQNGSLGTLISVKSTGESYGEVELDTGEKVEVTQSVLDCMELGYAITLHKDQPP
GHNSRASSLPCKKAGYLIELGSIRRLRGQKVKFILLAVVMI

NT seq 2106 nt +upstreamnt +downstreamnt
atgaatacagcaatacatgaagatcagatgcgcgtgaccagcatcccgtatagcactagg
ggatgtgtgattttcagcggtgtaccgctggcgaaagactctcacagaactaatagcggc
aagtactactacgtcaccataaaagccgaccctgacagcattcccgtgcacccagcactc
ggccaacattggtcagttaaggggattcgctcaataaaagccattaaaactggtgattat
gtgatgcagcagcatacctatgagtcacctagttatgttgagtgctctctccccgacacg
ggcgagcaactaatccgttttatcgcaaaagaaaatgacttcaaaggtattggtgaaagc
aaagcgagggcgctctggcagctattaggtgcggattttcatgatacattgacgaatgac
actcctgagtccagagagcgcctgatatcgattctgagtgacgattctgtggacgccctt
tttaagggctacgccaaatacaaaaatctggcacattgcaactggatgagcgaacacaac
atccccgccagtgtgcagcaacggctgctcaaacatcatggagaagcctccatcgatatt
atcaagagtaacccttacagcctcattggctttggtctttcattcggtgtcgttgaagac
attattaaagcaacggattttaagagcgatttgacacaaactgatccaaggagactgagc
gccgcgctagaaatggcgattcgcaaggaaatagaaaaaggtcatacttatacgactaat
tcgcaggtgcgaccctacctgaacaaactgctcaaagaaaaagagttggtcgcaaaggca
ttcaaggcaggtcatgataaagctcaatacattctgaaccccgacacaggaacctatcat
ccaaccgcccaattgctcatggagagtgttgttgcaaagcggctcaaaaaactggctaag
tgcaacaacctgtatgacgaaaacgctaatgccgcctactgctcggctgtttcagaactt
ccttatgaattaacctcaaagcaaattgaagccgtaacaacgtgtctagacaattcggta
agctgcattacaggcggtgcaggaacaggcaagacaacggtacttagaacggctctcagg
gcttaccatcaaatgggttttgaaattcacgccgtcgcgctcagtggtcgtgctgcaatg
aggctccatgagtccatcggttttgttacctcaaccattgccagattgctgcgtgaaaac
cctattgaacccagtgtagataaaccaaattacctactggtgattgatgaggcaagtatg
attgatttaccaaccatgtatcgccttgtcaatcacactcacccttcagtacgattgatg
ttcattggcgatcccgatcagctcccaccgattggctgcggtaaagtgctagcagatatc
gttgaagcaaaaacggtcgccaataccatgctagatattgtcaagagacaagaaggttca
acgggcattcctgaatactccaagctcatcaatcaaggtgtggtgcctgaccaattaagc
atgggttctatacactttcacgaaaccagtaaagaagacatagccaaagtctgttgcgag
ctttacaagcagcaccctgaaaatagtcgtgtaatggctccaactaaagcacttgttaag
gacatcaatcagctaatacaagaagctgtcaacccgagcaaagatgctctggaattccaa
atcaatggagataaattttttttgccacttcgcttgaatgatgcggttctattcacgcaa
aatcattatgagataggcgtccaaaatggctctcttggtacacttatcagcgtgaaatcc
actggcgaaagctatggtgaagtggaacttgatactggtgagaaggtcgaggtgacgcaa
tctgtcctagattgcatggagctgggctatgcaatcaccttgcacaaagatcaacccccg
ggtcacaattcccgcgcatcatcattgccctgcaaaaaggcaggatacttgatagagctt
ggctctatacggcgattacgagggcagaaagtgaaattcatattgttggcagtagtgatg
atatga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (26)   

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