KEGG   Vibrio parahaemolyticus BB22OP: VPBB_2833
Entry
VPBB_2833         CDS       T02409                                 
Name
(GenBank) Transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vpb  Vibrio parahaemolyticus BB22OP
Pathway
vpb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vpb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VPBB_2833
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpb03021]
    VPBB_2833
   03019 Messenger RNA biogenesis [BR:vpb03019]
    VPBB_2833
Transcription machinery [BR:vpb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     VPBB_2833
Messenger RNA biogenesis [BR:vpb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VPBB_2833
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 OB_RNB AAA_22 AAA FtsK_SpoIIIE Spore_III_AA
Other DBs
NCBI-ProteinID: AGB11281
Position
1:complement(3185792..3187051)
AA seq 419 aa
MNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
DDKPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGEIDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaaccttaccgaactgaagaacagacctgtgtctgaccttgtaaaactgggcgaaagc
ttaggactagagaacctagctcgcttaagaaaacaagacatcatcttcgcgattttaaaa
gcgcacgctaaaggcggcgaagacatctttggcgatggggttctggaaattctgcaagac
ggctttggtttcctacgcagtgcagacagttcgtaccttgctggtccggacgacatctac
gtatcaccaagtcagattcgtcgttttaacctacgtactggtgactcaattgctggtaaa
attcgcccaccaaaagacggtgaacgctactttgcccttctaaaagtcaatacagttaac
gacgacaaaccagacaacgctcgtaacaagatcctatttgaaaaccttacccctctgcat
gcgaatgaacgcatggtaatggagcgtggtaacggttctacagaagacatcacagcacgt
gttttagacttggcatcgcctatcggtaagggtcaacgtggtctgattgttgctccgcca
aaagcgggtaagacaatgcttctgcaaaatatcgctcaaagcatcgcatacaaccatcca
gagtgtgagttgatggtacttcttatcgacgaacgtccagaagaagtaacagagatgcag
cgtctagttaaaggtgaagtagtagcgtcaacgttcgatgagccagcatctcgtcacgta
caagtggcagaaatggtaatcgagaaagcaaaacgtcttgttgaacacaagaaagacgtt
gttatcctgcttgactctatcactcgtctagctcgtgcttacaacaccgtagtgccttca
tcaggtaaagtactaacaggtggtgtggatgcaaacgcattgcaccgtcctaagcgtttc
ttcggtgcggcacgtaacgtagaagaaggcggcagcctaaccatcatcgcaacggcacta
gtcgatactggttctaagatggatgaagttatctacgaagagttcaagggtacaggtaac
atggaactgcacttgaaccgtaagattgctgagaagcgtgtattccctgcgattgacttc
aaccgctctggtacacgtcgtgaagagctactgacgaagactgacgaactacagaagatg
tggattctgcgtaagatcgttcacccaatgggcgaaatcgacgcaatggaattcctaatc
gataagctagcaatgacgaagacgaatgatgagttcttcgatgcgatgcgtcgtcagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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