KEGG   Vibrio parahaemolyticus UCM-V493: VPUCM_3006
Entry
VPUCM_3006        CDS       T03116                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
vph  Vibrio parahaemolyticus UCM-V493
Pathway
vph03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vph00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VPUCM_3006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vph03021]
    VPUCM_3006
   03400 DNA repair and recombination proteins [BR:vph03400]
    VPUCM_3006
Enzymes [BR:vph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VPUCM_3006
Transcription machinery [BR:vph03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VPUCM_3006
DNA repair and recombination proteins [BR:vph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VPUCM_3006
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AHJ00965
Position
1:complement(3272213..3276415)
AA seq 1400 aa
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELETTNSETKRKKVTKRLKLVEAFIASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLSGPAEAEKAYRTK
QAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVVNREGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKGDNDAVEAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEQGNDVMIPGTEMPAHYFLPGKAIVNIEDGAEVGVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRDSGEVYEEMIPKHRQLNVFEG
ERVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGEQVEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRAEAQEGPS
AEQATDNLAALLNAGFSSDE
NT seq 4203 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtttgttctgtgcgcgt
atctttggcccagttaaagactacgaatgtctttgtggcaaatacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgatctagaaaaaggtcagatgcta
actgaagaagagtatctagaccgtctagaagagtggggtgacgagttcacagctaagatg
ggtgcagaagctatcaaggacctactaggttctatggatatgcacgctgaagctgaacaa
atgcgcgaagagcttgagactacaaactcagaaactaagcgtaagaaagtcactaagcgt
cttaaactggtagaagcgttcatcgcatcgggtaacaacccagagtggatgatcctgact
gtacttccagtacttccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttctgatctgaacgacctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagctgctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactagataacggtcgtcgtggtcgtgcgatcactggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgcgaagaaaatg
gtagagcgtgaagaagcggttgtttgggatatcctagacgaagtaatccgcgaacaccca
gtactattgaaccgtgcacctacacttcaccgtctaggtatccaggcgttcgaaccagta
ctaatcgaaggcaaagcgatccagctacacccacttgtttgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaaagatcaacgtg
aaaggtgaaggcatgtacctttctggcccagcagaggctgagaaagcataccgcactaaa
caagctgagcttcacgcgcgcgttaaagtacgtattacagagacagttgtagacgaagac
ggcaacagcacaactgagaccaagatggtagataccactgttggtcgtgcaatgctatgg
caaatcgtgccagctggtctaccgtacagcatcgttaaccaaaaactaggtaagaagcaa
atctctaacctactaaacgaggcgtaccgtaagctaggtctgaaagacactgtaatcttc
gctgaccaaatcatgtacacaggtttcgcttacgcggcactttctggtgtatctgttggt
atcgacgatatggttgtaccgccagctaagtacactgaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatcaggtcttgttactgccggcgaacgctacaac
aaagtgatcgatatctgggcatcgaccaacgaccgcgttgcgaaagcaatgatggaaaac
ctttcatctgaaacggtagttaaccgtgaaggcgaagaggaacagcaagagtcattcaac
agcatctacatgatggcggactcgggcgctcgtggttctgcagcacagattcgtcagctt
gccggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtaactgaacatgactgtggcactcacgagggtgtt
gacatgatgcctcacatcgagggtggtgatgttaaagttgcactgtctgagctagctcta
ggtcgtgtagttgctgaagacgttctaaaacctggtactgaagatgttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggaagagaactcagtagacagcatg
aaagtgcgctctgtagtaacgtgtgattctgacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtaaaccaaggtgaggcagtaggtgttatcgctgct
cagtctatcggtgaaccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcagcagagaacagcatccaagcgaagaacaacggttctgttaagctt
cacaacgctaagttcgtaacaaacaaagatggcaagctagttatcacttctcgtgcatct
gaactaaccatcatcgatgagttcggccgtacgaaagagaaacacaaactgccatacggc
tcgctactaagcaaaggcgacaacgacgcagttgaagctggtgaaacagtagcgaactgg
gaagcgcacacactgccaatcatcactgaagtagctggtcgtatccagttcgtagatatg
attgatggcgtaacagtttctcgtcaaacagatgacctaactggtctatcttcaagcgaa
gtaacggacgcagcagctcgtccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgacgagcaaggtaacgacgtaatgatccctggtactgaaatgccagctcactacttc
ctacctggtaaagcgatcgtgaacattgaagacggcgcagaagtaggtgtgggtgatact
ctagcacgtattcctcagaaatctggcggtaacaaagatatcaccggtggtcttccacgc
gttgctgacttgttcgaagctcgtaagcctaaagagcctgcgattcttgctgaacacaca
ggtacagttagcttcggtaaagagacaaaaggtaagcgtcgtctagttatcacgcgtgat
agcggtgaagtttacgaagagatgattcctaagcatcgtcagcttaacgtgttcgaaggt
gagcgcgttgaacgtggtgatgtaatcgctgatggtccagagtctccacatgacattcta
cgtctacgtggcgtacacgcagtaactcagtacatcgctaacgaagtacaagaagtttac
cgtttacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgcta
cgtaagtgtacaattactcacgctggtgactctgagttcctacctggcgagcaagttgaa
tactcacaagttaagattgctaaccgtaatctagaagctgaaggcaaagagcctgcacgt
tttgaacgtgaacttctaggtatcactaaagcgtctctagcaactgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgacctacgtggtctgaaagagaacgtaattgttggtcgtttgatcccagctggtact
ggtttcgcataccaccaagagcgtcaagctaaacgtgctgaagcgcaagaaggtccatct
gctgaacaagcaacagataacctagcagcacttctaaacgctggcttctcttctgacgag
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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