KEGG   Vibrio qinghaiensis: CCZ37_01050
Entry
CCZ37_01050       CDS       T05259                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
vqi  Vibrio qinghaiensis
Pathway
vqi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vqi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CCZ37_01050 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vqi03021]
    CCZ37_01050 (rpoC)
   03400 DNA repair and recombination proteins [BR:vqi03400]
    CCZ37_01050 (rpoC)
Enzymes [BR:vqi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CCZ37_01050 (rpoC)
Transcription machinery [BR:vqi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CCZ37_01050 (rpoC)
DNA repair and recombination proteins [BR:vqi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CCZ37_01050 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: ASU21290
UniProt: A0A223MUM8
Position
1:209335..213537
AA seq 1400 aa
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDLVAETEMMREELQTTNSETKRKKLTKRLKLVEAFISSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAQGEGMYLAGPKEAEKAYRTK
TAALHARVKVRITETVVDEDGYSTTETKMVDTTVGRAMLWQIVPKGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVVFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGVEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVSLTELAL
GRVVADDVMKPGTDEVLIPRNTLIDEKWCQIIDENSVDNMKVRSVVTCDADFGCCALCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNKGSVKL
HNAKFVINKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSVLSKGDNDTVEAGQTVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAKGKDVMIPGTDMPAQYFLPGKAIVNIEDGAEVGIGDTLARIPQKSGGNRDITGGLPR
VADLFEARRPKEPAILAEHTGTVSFGKETKGKRRLIITREGDETYEEMIPKHRQLNVFEG
EKIERGDVIADGPETPHDILRLRGIHAVTSYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLAGEQVEYSQVKVANRNLEAEGKQPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRAAQLKGPS
AEQATDNLAALLNAGFSSEE
NT seq 4203 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcacctgacatgattcgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaagcctgaacgtgatggtctgttctgtgcgcgt
atttttggtccagtcaaagactacgaatgtctttgtggtaaatataagcgtctgaaacac
cgtggcgtgatctgtgaaaaatgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcatcaccggttgctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctgctaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtatgtagtaaccgagccgggtatgacggatctagaaaagagtcagatgctt
actgaagaagagtatcttgaccgtctagaagagtggggcgatgagttcacagcgaagatg
ggcgcagaagcgatcaaagacctattgggttcaatggatcttgtcgctgaaacagagatg
atgcgtgaggagttacaaaccactaactctgaaactaaacgcaaaaaactgactaagcgt
ctgaagcttgttgaagcgttcatcagttcaggcaacaagcctgagtggatgatcctgact
gtgcttccggttcttccgccagatctacgtcctctagtaccactagatggcggtcgtttt
gcgacatctgatctgaacgatttgtaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgccttctagagctagcggctccggacatcatcgtacgcaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctacttgataacggtcgtcgcggtcgtgcgatcacaggttctaac
aagcgccctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagattactcaggccgttctgtaatcacagtaggtccatat
ctgcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagctagaaactcgcggcatggccacgacgatcaaagcagctaagaaaatg
gttgagcgtgaagaagcggttgtttgggatatcctagacgaagtgattcgtgaacaccca
gtactactaaaccgtgcaccaacactgcaccgtcttggtattcaagcgttcgaacctgta
ctgattgaaggtaaagcgattcaactgcacccacttgtgtgtgcggcgtataacgcggac
ttcgatggtgaccaaatggcggttcacgtgcctctaactttagaagcacagcttgaagct
cgtacactgatgatgtcgacgaacaacattctgtcgccagcatcaggtgatcctatcatc
gtaccttcacaggacgtggtcttgggtctgtactacatgactcgcgaaaaaatcaacgca
caaggtgaaggtatgtacctggctggccctaaagaggctgagaaggcataccgtactaag
acagcggcgctacacgcacgcgttaaagtacgtatcactgaaaccgttgttgatgaagat
ggttacagcacaactgagactaagatggtcgatacgactgtcggtcgtgccatgctatgg
caaatcgtgcctaaaggcctgccatacagcatcgtgaaccagaagcttggtaagaaacag
atctcaaatctattaaacgaagcgtatcgtaagcttggtttgaaagatacggtcgtattt
gctgaccaaatcatgtacaccggttttgcttatgcagcactgtcaggcgtgtcagttggt
atcgacgacatggttgtaccagcagcgaaatacactgaaattgctgaagcagaagaagaa
gtacgcgaaatccaagaacagttccaatcaggtcttgttacagcgggtgagcgctacaac
aaagttatcgatatctgggcgtctaccaacgaccgtgttgcgaaagcgatgatggataac
ctatcttctgaaaccgtgatcaaccgtgatggcgtagaagaacaacaagaatcgtttaac
agcatctatatgatggctgactcgggtgctcgtggttctgcggctcagattcgtcagctt
gctggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgcctatcaca
gcaaactttaaagaaggcctgaacgtactacagtactttatctctacccacggtgcacgt
aagggtctagcggatacagcattgaagacagcgaactcaggttacctgactcgtcgttta
gtcgacgttgcacaagatgttgtggtaacagaacatgactgtggcactcatgaaggtgtc
gacatgatgcctcatatcgagggtggtgatgttaaagtttctttaactgaactggctctt
ggtcgtgttgtggctgacgatgtgatgaaaccgggtactgatgaagtacttattccacgt
aatactctgattgatgagaagtggtgtcagattatcgatgagaactctgtcgataatatg
aaagtacgttcagtggtaacctgtgatgcggacttcggttgctgtgcgctatgttacggt
cgtgatcttgctcgtggtcacctagtgaaccaaggtgaggcagtcggtgttattgctgct
caatctatcggtgagccgggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcttctactgctgcggcagagaacagtatccaagcgaagaacaaaggttcggtgaaactt
cacaacgctaagttcgttatcaataaagataagaagctggttatcacatctcgtgcatca
gagctgactatcattgatgaatttggtcgcactaaagaaaaacacaaactgccttacggc
tctgtgttgagtaaaggtgataacgacacggttgaagctggtcaaacagtggctaactgg
gaagcccacactatgccaatcatcactgaagtggctggtcgcatccaattcgttgatatg
attgatggtgtaacagtttctcgccaaacagatgacctaacgggtctatcttcaagcgaa
gtaaccgaagccgccgctcgtccagcagcaggtaaagatatgcgcccagctatcaaactt
gttgatgcgaaaggtaaagatgtcatgatccctggcactgatatgccagctcaatacttc
ttaccgggtaaagcgatcgttaacatcgaagatggtgctgaagttggtattggtgacaca
ttagcgcgtattccacaaaaatctggcggtaaccgagacatcacgggtggtctacctcgc
gtagctgacttgtttgaagctcgtcgaccaaaagagcctgcgattcttgctgagcacaca
ggtactgtgagctttggtaaagaaactaaaggtaaacgtcgtctaatcatcactcgtgag
ggtgacgaaacttatgaagaaatgattcctaagcatcgtcaacttaacgtgtttgaaggt
gagaagatcgaacgtggtgacgttattgctgatggtcctgagactccgcacgatatccta
cgtttacgtggtatccatgctgtaacgtcttacatcgctaacgaagtgcaagaagtttac
cgtctgcaaggtgttaagattaacgataagcacattgaaactatcgttcgtcaaatgctg
cgtaagtgtacgatcactcatgctggtgactctgagttcctagcgggtgagcaagttgaa
tactcacaagtgaaagttgcaaaccgtaacctagaagcggaaggcaaacagcctgctcgt
ttcgagcgtgagctactcggtattactaaagcatctctagcgactgaatctttcatctct
gcggcatcgttccaagagacaactcgcgtactaacagaagcggctgtttctggtaaacgt
gatgatcttcgcggtctgaaagaaaacgtaatcgttggtcgtctgattccagcgggtaca
ggtttcgcttaccaccaagagcgtcaagctaaacgtgcggcacagctaaaaggcccgtct
gctgaacaagcgacagataacctagcggcactgctaaacgcaggtttctcttctgaagag
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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