KEGG   Veillonella rodentium: 44547418_01442
Entry
44547418_01442    CDS       T05216                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
vrm  Veillonella rodentium
Pathway
vrm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vrm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    44547418_01442 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vrm03400]
    44547418_01442 (mfd)
Enzymes [BR:vrm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     44547418_01442 (mfd)
DNA repair and recombination proteins [BR:vrm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      44547418_01442 (mfd)
SSDB
Motif
Pfam: UvrB_inter Helicase_C DEAD TRCF CarD_TRCF_RID ResIII SecA_DEAD RecG_dom3_C TsaE AAA_30
Other DBs
NCBI-ProteinID: SNV71493
UniProt: A0A239ZKU6
Position
1:complement(1544149..1547445)
AA seq 1098 aa
MDNTFTELLSQNPSFADGLNAFQNKGKSVIYGLSGSQKSFLLSRAFADGPTKPFVIVVHD
KEHKEMWERDLAFFWPNVPVLSFPVTDHVDFTTVARSLEDQGAQMRALSLLAWQEPVVVL
ANAEEVTQYVVSPQYLKGQSLHFGLSDVIDRNTVLEQLVTIGYERVDQAEQRGHFAVRGD
ILDIYPVNSDDPIRIEFFGDEIDTLRFFSVESQRSVEQIESYTVTPFFLGNDDAESTLLS
YVKEGTLIYDEPGRIQEALKKFLKEDPTHRKMHCDWSALQRTADARTQIAFTFMQQRSIG
LGGFTAIGIQGKTMTSFERQIPLLTDEIEQWHRRHHQVVLVLNNQQRRKGIERALEQENI
PFIHSDTWISKPDTVVILQGLLTDGFELPNSHIVVVVEGNIYGQQKRKLRNKPKKGQEIN
YFTDLTVGDYVVHSVHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANHLDQLQKY
IGNEGDVPRIHKMGGGDWNKVVTKAKKSIDDLAEKLVELYAQREITEGFAFLPDQPWQQE
FEDAFPYEETADQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQV
AVLVPTTVLAQQHYQTFVDRFSSFGVKVDVLNRFRSTAEKKQILKGVEDGSVDVLIGTHS
LLNKKVKFKDLGMLVVDEEQRFGVAQKEKWKEWAHNIDVLTLSATPIPRTLHMSLVGVRE
MSVINTPPEERLPVQTYVVEYDMNLIADAIKRELSRGGQVYFVYNRVASIEHMGELLADA
LPGLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLVSTSIIETGLDIPNANTIIIYDADRLG
LSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEI
RGAGNLLGSQQHGNIASVGFGMYVTMLEEAIAKAQNKEVERETAVDPAIDLEVDAFIDDA
YIKDSARKISVYQRLLRIKSKKDLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGI
KSMVRREGQLIIHWYDDSKMADWDMGTVREDLWKKMKFVDTKPTTLYVSLNGMKGSILTI
TEAVMEALSQKSSTKESL
NT seq 3297 nt   +upstreamnt  +downstreamnt
atggataatacatttacagaactgctttcacagaacccatcctttgcggatgggctaaat
gcatttcaaaataaaggaaaatcagttatatatgggctcagcggctctcaaaagagtttc
ttgttgagccgggctttcgcagacgggcccaccaagccgttcgtcatagtggttcatgat
aaggaacataaggagatgtgggaacgggatttagcctttttctggccgaatgttccggtg
ttatcatttcctgtaacggatcatgttgattttaccaccgttgcacgcagcctggaggac
cagggggcgcagatgcgggccttgagcctgttagcgtggcaggaaccggtagtggtgctg
gccaatgcggaagaggtcacccaatatgtggtgtcaccccaatatttgaaaggccaatct
cttcacttcggtttgagtgatgtgattgatcgaaataccgtactggaacagttggtgaca
attggatatgaacgagtggaccaggcagaacagcgtggtcattttgccgtgcgcggcgat
atattggatatttatcccgtaaatagtgatgaccctattcgtattgagttcttcggtgat
gaaatcgatacattgcgttttttctccgttgaaagtcagcgctccgtcgagcaaatcgag
tcctatacggtgacgcctttcttcttaggtaatgatgatgctgaaagtacgcttttatcc
tatgtaaaagagggaactcttatttacgatgaaccgggacggattcaagaggcattgaaa
aagttcctcaaggaggatccgactcatcggaaaatgcactgtgactggagcgccttgcag
agaaccgcagatgcgcggacacagattgctttcacatttatgcagcagcgttccatcggc
cttggcggatttaccgcaatcggtattcaaggcaagacgatgaccagttttgagcgtcag
attccgctgttgacggatgaaattgagcagtggcatcgccgacatcatcaagtggtgcta
gtccttaataaccagcagcgcagaaagggcattgagcgggctctggagcaggaaaatatt
ccttttattcatagtgatacctggatttctaaacccgatactgtcgttattttacaaggc
cttttaacagatggttttgaattgccgaacagccacattgtggttgttgtagagggcaat
atttacggacagcagaagcgcaaattgagaaacaagccgaagaaaggtcaggaaatcaat
tattttacggatctgactgtcggtgattatgtagttcacagtgttcacggtatcggcaag
tacatcggacttaagacgattgaaaccgaaggtattcatcgtgattatattgaaatcgcc
tatgccggtacggataaattgtttttgccggccaatcatctggatcagttgcaaaagtat
atcggcaatgaaggtgatgtgcctcgtatccataagatgggcggcggtgactggaataag
gtcgttacgaaggcgaaaaagtccatcgatgacttggcggagaaattggtggaattatat
gcacagcgtgagataaccgaagggttcgcgtttcttcctgatcaaccgtggcaacaagaa
tttgaagatgcatttccttatgaagaaacggcggatcaactgcaggcgacggcggaaatc
aaggagtcgatggaacgcccggtgcctatggacagacttctggcgggggatgtaggcttc
ggtaaaaccgaggtggctatgcgagccatctttaaagccgttatgagcggtaagcaggtg
gccgtgctcgtgccgaccaccgtattggctcaacaacattatcagacctttgtggaccga
ttctcttcgttcggagttaaggtggacgtattgaatcgattccgcagtacagccgagaaa
aagcagattctcaagggcgttgaggacggctctgtagatgtattgatcggtacgcattca
ttgctcaataaaaaggtaaagtttaaagatttaggtatgctcgtcgtcgatgaggagcag
cgattcggtgtagcacagaaggaaaagtggaaagaatgggcgcataatatcgatgtactc
accttgagtgccactccgattcctagaacattacatatgtcactcgtaggggtgcgggag
atgtccgtcattaatacgccgcctgaagagcgtctaccggttcagacctatgtggttgaa
tacgatatgaatctcatcgctgatgcgatcaagcgggagttatcccgagggggacaggtg
tatttcgtatataaccgcgttgcctctattgaacatatgggggaacttctggcagatgca
ttgccggggctacggtatgctattgctcacggtcagatgacggggcgtcaaatcgaagag
attatgaccgacttttatgaaggtcactatgatgtgctcgtatcgacgagtatcattgaa
acgggattggatattccgaatgcaaatacgattattatttatgatgcggaccgattggga
ttgtctcagctatatcagatgcgcggccgtgtggggcgctcgcgccgcagggcttatgcg
tatttcatgtatcgtccggataagatgttatccgaggcggcggagaagcgcttgaaagcc
atcgaggaatttacggaactcggagcaggttttaagctcgccatgcgcgatcttgaaatc
cgtggagcaggtaatttgttgggctcgcaacaacatggcaacatcgcatccgtcggcttc
ggtatgtatgtaacgatgctggaagaggccattgcaaaggctcaaaataaagaggtggaa
cgggagactgccgttgatcccgccatcgatttagaggtggatgcctttatcgacgatgcc
tatatcaaggacagtgcccgaaaaatctccgtatatcaacgattattgcgcattaagtct
aaaaaagaccttgatgatatgacggatgaactcattgatcgcttcggaacgccgacggat
ccggtggaccgtttgttgcgcatcgctcaaatcaaggagcaggctcgattattgggcatt
aagagcatggtacgccgtgaaggacagctcattattcactggtacgatgattcgaaaatg
gccgattgggatatgggcactgttcgtgaagatttatggaagaaaatgaaattcgtagat
acaaaaccgaccacattgtatgtgagcctcaacggtatgaagggttctattttaacgatt
acagaagcggtgatggaggcattgagtcagaaatcatcgacaaaggagagcctatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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