KEGG T05115: BSZ04

Vibrio rotiferianus: BSZ04_01220

Entry

BSZ04_01220       CDS       T05115

Name

(GenBank) ATP-dependent RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

vro Vibrio rotiferianus

Pathway

vro03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:vro00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSZ04_01220
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vro03019]
    BSZ04_01220
   03009 Ribosome biogenesis [BR:vro03009]
    BSZ04_01220
Enzymes [BR:vro01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BSZ04_01220
Messenger RNA biogenesis [BR:vro03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BSZ04_01220
Ribosome biogenesis [BR:vro03009]
Prokaryotic type
  rRNA helicases
   BSZ04_01220

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII CMS1 Flavi_DEAD WSD

Other DBs

NCBI-ProteinID:

ASI93674

Position

1:complement(232380..234299)

AA seq 639 aa
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSDAANKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGGYRGNRDGNREGGRREGGRREGGFRGN
RDGNREGGERRFDRNRGGDHRGAHRGERGHSRGRRTQDA

NT seq 1920 nt +upstreamnt +downstreamnt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaaactagatctaaaccaacgtaaaccacaagcaatcgttctt
gctccaactcgtgagctagcgattcaggttgcggctgagatgaagaaccttggtaaaaac
atcaagggtcttaaagttctagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gctcttaaaaatggtgcacacgttgttgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgtctacatctagacgaagttaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgctatcatggagcacgctcctgagtca
gctcaacgcgttctgttctctgcaactatgccaccaatgctgaaaaacattgttgagcgc
ttcctacgtgatcctgtcactgttgacgttgctggtaaaaaccacactgtagacaaagtt
caacaacagttctgggtagtgaagggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggctttaaagctgcagcactgcacggtgatattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgttgctcgtggcctagacgttccacgtattactcacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgcagga
cgtaaaggtaaagcgatccttctagttcgtactaaccaaatccgtatgcttcgcactatc
gagcgtgtaactaagtcatctatggaagaaatccaacttcctctacgtgaccaagttgca
gaagctcgtctaaacaagctagcggctgaactggaagcagagaaagaacacaaagcacta
gacaagttcgctgagcttgtagagaaactacaaacttctctagaaatcgatccagcgatg
cttgctgcaatgcttcttaagcgtcagcaaggtaaacgtcctctattctacattggcgaa
gacccaatggtagaagcaattgaacgtgacaagcaacgtcgtaaagagcgccgtgaaggt
ggtcgtgacggcggtcgtaacttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagacatcgttggcgctctagcaaacgaactaggt
ctaggcaaaggttctatcggtgcgatcaagctagcgcaaggtcacacattcgtacagcta
cctaaagcaatgacttcagacgctgcgaacaagctaagcaaactacgtatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgatgacttccgtgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggtggtcgtcgtgatggcggtggttaccgtggtaaccgcgat
ggcaaccgtgaaggtggtcgtcgtgaaggcggccgtcgcgaaggtggtttccgtggtaac
cgtgacggtaaccgtgaaggtggcgaacgtcgtttcgatcgcaaccgtggtggggatcac
cgtggtgcacaccgtggcgaacgtggtcacagccgtggccgtcgtacacaagacgcataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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