KEGG   Aliivibrio salmonicida: VSAL_I2353
Entry
VSAL_I2353        CDS       T00782                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
vsa  Aliivibrio salmonicida
Pathway
vsa03030  DNA replication
vsa03410  Base excision repair
vsa03420  Nucleotide excision repair
vsa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VSAL_I2353
   03410 Base excision repair
    VSAL_I2353
   03420 Nucleotide excision repair
    VSAL_I2353
   03430 Mismatch repair
    VSAL_I2353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vsa03032]
    VSAL_I2353
   03400 DNA repair and recombination proteins [BR:vsa03400]
    VSAL_I2353
Enzymes [BR:vsa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     VSAL_I2353
DNA replication proteins [BR:vsa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     VSAL_I2353
DNA repair and recombination proteins [BR:vsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     VSAL_I2353
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VSAL_I2353
   MMR (mismatch excision repair)
    DNA ligase
     VSAL_I2353
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VSAL_I2353
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT
Other DBs
NCBI-ProteinID: CAQ80037
UniProt: B6EJQ6
Position
1:complement(2526803..2528812)
AA seq 669 aa
MSIEKTLDELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTVDSPSQR
VGGEALGGFTQVQHEIPMLSLDNAFNDNELDSFEKRINDRLISDSVSLFCCEPKLDGLAV
SLLYVDGLLVQAGTRGDGATGENITENVRTIRCIPLTLQGEGWPTRLEVRGEVFMPKAGF
DALNERALKRAEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGIIEGGELEGSHYQ
RFVQLKNWGLPMCEETKQCHSLTDVKAYYKDILERRDALKYEIDGVVIKVDSISLQEQLG
FVARAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNA
DEIARLGVHIGDTVIIRRAGDVIPQIVSVVEARRPEDSKAIIYPTTCPACDSQLERIEGE
VVTRCVAGLVCPAQRKEALKHFVSRKALDVDGLGDKVVEQLVDKEMVETPADLFKLSAGV
LTVLDRMGPKSAQNVVNALNKAKETTLSRFLYSLGIREVGEATAANLALHFQTLNAISSA
TFEQLIEVSDVGDIVAKHILGFFSEPHNQAVIENLQLMGVNWPDIKALDESVPQPLADKV
VVLTGTLYKLKRNEAKAALQELGAKVAGSVSKNTDILFAGEAAGSKLAKAEELGVEIMNE
EQLIEILNN
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgagtattgaaaaaacactagatgagcttaaaaaacagcttaattatcacgcttaccgt
tattatgttgaagacagtccagagcttcctgatgctgaatatgatcgaatgatgcagcaa
ctattgttgattgaaaaagaacacccagagttcatgactgtcgactctccaagccagcgc
gttggtggtgaagcattaggtggttttactcaagttcaacatgagatccctatgttgtca
ttggataatgcatttaacgataatgaactcgactcttttgaaaaacgcattaatgatcgt
cttatttcggattcggtttccttgttttgttgtgagcctaagcttgatggtttagcggta
agccttttgtatgttgatgggctgttagttcaagcgggaactcgtggtgatggtgcaaca
ggcgaaaatattacagagaacgtaagaactattcgttgcataccgctaacgttacaagga
gaaggatggccaactcgtttagaggttcgcggtgaagtcttcatgcctaaagccgggttt
gatgcgttaaatgaaagagcgctaaaacgtgctgagaagccatttgctaacccccgtaat
gcggccgctggcagtttgcgtcaacttgattcaaaaatcacagcaactcgcccattgagc
ttttatgcatatagtgtaggaatcattgaggggggggagctagaaggcagtcattatcaa
cggtttgttcagttaaaaaactggggtttacctatgtgtgaagagacaaaacaatgccac
tcactgaccgatgtaaaagcatattataaagacattctcgagcgtcgagatgcattgaaa
tatgaaattgatggtgtagtgattaaggttgatagtatttctttgcaagagcaactaggc
tttgttgcaagagccccgcgttgggctattgcttataaatttcctgctcaagaagaactg
accgttttaaacgatgttgaatttcaggtcggtcgtactggggcaataacccccgtagcc
aaattagagcctatttttgttggcggggtgacggtgagtaatgcgacattacacaatgcc
gatgagattgctcgcttaggggttcatattggtgatactgtcattattcgtcgtgctggt
gatgttatccctcagattgtatcagtcgtagaagctcgtcgtcctgaagacagtaaggcg
attatctatccaacaacatgccctgcttgtgattctcaactggaacgaattgaaggcgaa
gtcgtcacgcgttgtgtcgctggtttagtttgtcctgctcaacgtaaagaagcgttaaaa
cattttgtttctcgcaaagcgcttgatgtagatggcttgggagataaagtggtagagcaa
ctcgtagataaagaaatggtggagacaccggctgatttatttaaactgtctgcaggtgta
ttaacagtcctcgatcgtatgggaccaaagtcagcgcagaatgtggtcaatgcattaaat
aaagcgaaagaaacgacgttatcacgtttcttatattctttagggatcagagaagttgga
gaggcgactgcggctaatttagctctccattttcaaacattaaatgcaataagttccgcc
acatttgaacaattaattgaagtcagtgatgttggcgatattgttgctaaacatatactt
ggtttctttagtgagcctcataatcaagctgtgattgaaaatttacaactgatgggcgtt
aattggccggatattaaagcgcttgatgaatcggttcctcagccactagctgataaagtt
gttgtattaacaggaacattatacaaactaaaacgcaatgaagctaaagcggcactacaa
gaattaggcgctaaagttgctggtagtgtatcgaagaataccgatattctttttgctgga
gaagcagccggttcaaaattagccaaagcagaagaactcggtgttgaaataatgaatgaa
gaacagttgattgaaatattaaataattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (29)   

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