KEGG   Vibrio scophthalmi: VSVS12_00121
Entry
VSVS12_00121      CDS       T04650                                 
Symbol
dpo1
Name
(GenBank) DNA-directed DNA polymerase
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vsc  Vibrio scophthalmi
Pathway
vsc03030  DNA replication
vsc03410  Base excision repair
vsc03420  Nucleotide excision repair
vsc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VSVS12_00121 (dpo1)
   03410 Base excision repair
    VSVS12_00121 (dpo1)
   03420 Nucleotide excision repair
    VSVS12_00121 (dpo1)
   03440 Homologous recombination
    VSVS12_00121 (dpo1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vsc03032]
    VSVS12_00121 (dpo1)
   03400 DNA repair and recombination proteins [BR:vsc03400]
    VSVS12_00121 (dpo1)
Enzymes [BR:vsc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VSVS12_00121 (dpo1)
DNA replication proteins [BR:vsc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     VSVS12_00121 (dpo1)
DNA repair and recombination proteins [BR:vsc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     VSVS12_00121 (dpo1)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VSVS12_00121 (dpo1)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: ANS83957
UniProt: A0A1B1NJS8
Position
1:complement(128224..131025)
AA seq 933 aa
MARIPDNPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAV
IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISISGVEADDVIGT
LAHQASQQGIPVLISTGDKDMAQLVDENVTLINTMTNVVLDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGSMEKLYQNLDDIAPLGFRGSKTMAKKLEDNK
ENALLSYQLATIKLDVEMEFKPEQLVKEQPNTDELIKLYGQLVFKSWLNELLEGGTGVVE
AIEKSGAAVPSAPSASENQVEIDRSPISIDRSQYETILDQERFNHWLEKLKASDVFAFDT
ETDSLDYMVANLIGVSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQLKPLLEDDNQAK
VGQNLKYDASIVARYGIEMRGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQV
AGKGKKQLTFNQIDLEQASPYAAEDADVTLRLHHRLNESLAKDDKLNAIYHEIEMPLVPV
LSRIERTGVLIDDMKLSAQSQEIAVRLDELEQKAYELAEQEFNMNSPKQLQALLFEKMGL
PVIKKTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVH
TSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKILAVDYSQIELRIMAH
LSGDKALLEAFREGKDIHAATAAEIMGTTIDLVSSEQRRRAKAVNFGLIYGMSAFGLAKQ
LGIPRGEAQDYMNKYFERYPGVMQYMEDTRSAASEQGYVETIFGRRLHLPEIQSRNGMRR
KAAERAAINAPMQGTAADIIKKAMLLVDEWIEKEGDGRVKLLMQVHDELVFEVQETALAE
IETKVQELMESAATLAVPLIAEAGHGDNWDQAH
NT seq 2802 nt   +upstreamnt  +downstreamnt
atggctcgtatcccagataacccgttaattctgatcgacggttcttcctatctataccgt
gcattccatgcttacccaggcaccatgagtaatggtgatattccaaccaatgcggtttat
ggcgtggtaaacatgctgcgtagcatgatgcgtcaatttgcatcggatcgtatcgcggtg
atctttgatgcgaaaggaaaaaccttccgtgatgatatgtatccggaatacaaggcaaat
cgacctccgatgcctgatgatcttcgctgtcagatcgagcctctgcacaatgttattcgc
gctatgggcctgccattgatctcgatctcgggcgtcgaagcagatgacgtaatcggcaca
cttgcacaccaagcatcgcagcaggggatccctgttttgatcagcactggcgataaagat
atggcgcagctggtggatgaaaatgtcaccttgatcaataccatgaccaatgtggtgctg
gatcgtgaaggcgtgattgaaaaatttggtattccacctgaactgatcatcgattacctc
gcattgatgggtgataaagtggataacattcctggtgttccgggggtgggtgacaaaacg
gccacggctttgttgcaaggcattggtagcatggagaagctgtatcagaatcttgatgat
attgcgccacttggcttccgtggttcgaaaaccatggccaaaaaactggaagataacaaa
gaaaatgcattgctctcttaccagctcgcaaccatcaagcttgatgtggaaatggagttc
aagcctgagcagttagtgaaagaacaaccgaacactgatgagttgatcaaactgtatggt
caattggttttcaaatcatggctaaacgagctacttgaaggtggcacaggtgtggttgaa
gcgatagagaagagtggtgcagcggtcccatcagcaccttcggcaagcgaaaaccaagtg
gaaattgaccgttcaccgatcagcattgaccgtagccaatatgagaccattcttgatcaa
gagcgctttaaccattggcttgaaaagcttaaagcgagcgacgtgtttgcttttgacacc
gaaactgacagcttagattacatggtcgcgaatctgataggcgtctcttttgctaccgaa
gaaggcgtagccgcttatgtaccagtggcgcatgactatttagatgctccacaacagctt
gatcgtgattgggtattggagcaattaaagcctttgctagaagatgacaatcaagccaaa
gtaggtcaaaacctcaagtacgatgcaagcatcgttgctcgttatggcattgagatgcgt
ggcattaaattcgataccatgttggcttcctacgtatataacagcgtaggtggtaagcat
gatatggatagcttggcactgcgtttcttgcagcatagctgtatctcatttgaacaagtg
gcaggtaagggcaagaaacaactgacctttaaccaaatcgaccttgagcaagcgtcacct
tatgccgcagaagatgctgatgtgacattgcgtttgcaccaccgtttaaatgaaagccta
gcaaaggatgacaaactcaacgcgatttatcatgaaattgaaatgcctttggtgccggtt
ttatcccgcattgaacgtactggcgttttgattgatgacatgaagttgtctgcacagtcg
caagaaattgctgtgcgcttggatgagttagagcaaaaagcgtatgaactggctgagcaa
gaattcaatatgaattcaccaaagcagttgcaagctttgttgtttgaaaaaatgggccta
cctgttattaagaaaacgccatcaggcacaccttcaaccaatgaagaagtgttgcaggaa
ttggcattagactatccattaccaaaattgattttggaatatcgtggtttggctaagctt
aaatcgacctataccgataagctgccaaaaatgatcaatccagagacgggtcgtgtgcat
acttcttaccaccaagcggtaaccgcgacgggccgtctttcttcgaccgatccaaacctg
cagaatataccaatccgtaatgaagaaggacgtcgtattcgtcaggcctttattgctccg
catggttataagattctcgcggtcgactattcccaaattgaattgcgtattatggcgcac
ctttcaggtgacaaagcgttgcttgaggcattccgtgaaggtaaggatatccacgcggca
accgcggcagagattatgggaaccacgattgatcttgtttcatcagagcaacgtcgccgt
gcgaaagcagtgaactttggattgatttacggcatgagtgcatttggtctggctaagcaa
cttggtattccacgcggcgaagcgcaagactacatgaacaaatatttcgagcgttaccct
ggtgtgatgcaatatatggaagacacacgtagcgcggcttcagagcaaggctatgtggaa
accatctttggccgtcgtctacacctacctgaaattcagtcacgtaatggtatgcgtcgt
aaagcagccgaacgtgcggcaatcaacgcaccaatgcagggaactgcagcggatattatt
aaaaaagcaatgttgctggttgatgagtggattgaaaaagaaggcgatggtcgtgtgaaa
ttgcttatgcaagtgcacgatgaactcgtatttgaagttcaagagacggcactggccgaa
attgaaacaaaagtacaagaattgatggaatcggcggccacacttgcggtgccgctaatt
gctgaagcgggtcacggtgataactgggatcaggcacactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system