KEGG   Vibrio mediterranei: BSZ05_11640
Entry
BSZ05_11640       CDS       T04936                                 
Name
(GenBank) RNA pseudouridine synthase
  KO
K06179  23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Organism
vsh  Vibrio mediterranei
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vsh03009]
    BSZ05_11640
Enzymes [BR:vsh01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.24  23S rRNA pseudouridine955/2504/2580 synthase
     BSZ05_11640
Ribosome biogenesis [BR:vsh03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    BSZ05_11640
SSDB
Motif
Pfam: PseudoU_synth_2 S4 DUF3603 TGS Cupin_2 CRISPR_Cas2 Orexin
Other DBs
NCBI-ProteinID: ASI90369
Position
1:2475237..2476184
AA seq 315 aa
MSEIRTKVQFVDIDDDMAGQRIDNFLRNQLKNIPKSVVYRIVRKGEVRVNKKRVKAEYKL
QAGDSVRIPPVTIEEKQEEAPISTKLNKVAELESQIIYEDDHMLILNKPSGIAVHGGSGL
KFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYFAL
VMGKWKPSCRVVKAPLLKNEVNSIVRVNPNGKPSETRFKVLESFEQATLIQASPITGRTH
QIRVHTQYTGHPIAWDDRYGDRRFDAYTAKVGLDRLFLHAANIVFKHPANDEKMEIHAEM
EPKLQQAIKKLKAGV
NT seq 948 nt   +upstreamnt  +downstreamnt
atgagtgaaattagaactaaagtccaatttgtcgatattgacgacgatatggctggtcag
cgcatcgataactttttgcgcaaccaattgaaaaacattcctaagagtgttgtgtaccga
atcgtgcgcaagggtgaggtacgtgtaaacaaaaagcgtgtcaaagcggaatacaagctt
caagcaggggatagcgtacgtatacctcctgttacaatagaagagaagcaagaagaagcg
ccaatcagcacaaaattgaataaagtggcagagcttgagtcacaaattatctatgaagac
gaccacatgctgatcttaaataagccatctggaatagcggttcatggtggtagtggtttg
aagtttggagcgattgaagctctaagagcattacgtccacaagcacgcttcttagaatta
gttcaccgtatagatcgcgatacttcaggtattcttttagttgcgaagaagcgatctgct
ttgcgtcatttgcaagctcagtttcgtgagaaaacggtacagaagtattactttgcccta
gtaatgggcaaatggaagcctagttgtcgagtagtaaaagcaccgctgctaaagaatgaa
gtgaatagtattgttagggttaaccctaatggcaaaccttcagaaactcgcttcaaggta
ctagagtcgtttgagcaggcaacgctgattcaagcaagcccaattactgggcgtacccac
caaattcgagtccatacacagtacacaggccatccgatagcatgggatgatcgctatggt
gatcgccggtttgatgcctatacagcgaaagtgggtctagaccgtttgttcctgcatgcc
gcaaacattgtcttcaagcatccagcgaatgatgaaaaaatggaaatacatgctgagatg
gagccaaagttgcagcaagcgattaaaaagctaaaagcaggcgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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