KEGG   Vibrio mediterranei: BSZ05_23420
Entry
BSZ05_23420       CDS       T04936                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
vsh  Vibrio mediterranei
Pathway
vsh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSZ05_23420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vsh03019]
    BSZ05_23420
Enzymes [BR:vsh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BSZ05_23420
Messenger RNA biogenesis [BR:vsh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BSZ05_23420
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA Helicase_RecD
Other DBs
NCBI-ProteinID: ASI93344
Position
2:complement(1483749..1485005)
AA seq 418 aa
MTSFDSFAFSSTIHQNLAALDYESPTPIQARAIPHVLDGQDILAGAQTGTGKTAAFGLPL
IHKLAQEPKDRESNSKVIRSLVLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGVQ
TKNLVGGADILVATPGRLLDHQHNRNITLSECEYLILDEADRMLDMGFMPDLNRILKRLP
KERQNMMFSATFEQRIKTLAHRIMNEPIEVQVTPANSTADTVKQMVYPVDKKRKHELLAY
LIGSRNWQQVLVFTKTKQGSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKVRA
LIATDVAARGLDIQQLEQVVNFELPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYLLE
AIERLLDTRLPQEWLAGFEPSPASEVEPDRAPRRKGRGADKRKMKAKLKIHANRGKKR
NT seq 1257 nt   +upstreamnt  +downstreamnt
gtgacttcgtttgattcttttgcttttagtagcacaattcatcaaaacctagctgcgttg
gactatgagtcgccaacacctattcaagcacgtgctattccacatgttcttgatggccaa
gatatcttagccggagcacaaacaggcacgggaaaaactgcggcgtttgggcttcctttg
attcacaaacttgctcaagaacctaaggatcgagagtctaactccaaagttattcgttct
ttagtactcacgccaacaagagaacttgcacaacaggtgtttgatagcttagtaccgtta
gcaaaagacactggacttaaagtagttgttgcttacggtggcacaagtatgggcgtacaa
actaaaaacctcgttggtggtgctgatatcttggtagcaacaccaggacgccttttggat
caccaacataaccgcaatatcactttatctgaatgcgaatatcttattttggacgaagct
gaccgtatgttagatatggggttcatgccagatttgaatcgtattctcaagcgcttacca
aaagagcgccaaaatatgatgttctcagcaacatttgaacagcgtatcaaaacgctagcg
catcgtattatgaatgagcccatcgaagttcaagtcaccccagcgaactcgacggcagat
accgtaaaacagatggtttatcccgttgacaaaaaacgtaaacacgaactgctggcgtac
ttaattggttctcgcaattggcaacaggtattggtgtttaccaaaacaaaacagggtagt
gatgcactcgcaaaagagcttaagctcgatggcatcaatgcggtttcaatcaatggtgat
aagagccaaggagcgcgtcaaaaagcgttggatgattttaaatccggaaaagtacgagca
ttgattgcaacggatgttgcggctcgtggactagatattcagcagctggagcaagttgtg
aactttgagctgccgtataaagcggaagactatatccatcgtattggacgaacaggtcga
gcggggcatgcaggttttgcagtatcgttaatgagtcacgatgagcagtatcttctagaa
gcaatagagcgtttgctagatacgcgattaccacaagagtggttggcaggatttgaacca
agtccggcctctgaagtcgaacctgatcgtgcacctcgccgtaaaggtcgaggggcggat
aaacgtaagatgaaagccaagcttaagattcatgccaatcgtggtaaaaagcgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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