KEGG   Vibrio mediterranei: BSZ05_24505
Entry
BSZ05_24505       CDS       T04936                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
vsh  Vibrio mediterranei
Pathway
vsh03420  Nucleotide excision repair
vsh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BSZ05_24505
   03430 Mismatch repair
    BSZ05_24505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vsh03400]
    BSZ05_24505
Enzymes [BR:vsh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BSZ05_24505
DNA repair and recombination proteins [BR:vsh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BSZ05_24505
   MMR (mismatch excision repair)
    Other MMR factors
     BSZ05_24505
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_12 AAA_30 HHH AAA_11 HHH_5 HHH_3 Helicase_RecD
Other DBs
NCBI-ProteinID: ASI92925
Position
2:complement(1718919..1720991)
AA seq 690 aa
MAQPITLNHQQQLAVDFGMPKSGNTSNHLPLLIIAGAGTGKTNTLAHKTAQLLVQGVPPE
KILLVTFARRASAELASRANRIAEQQLNEQRKQYHPVKLDWMGTFHSIAARLLREHAALI
GLESDFTIMDRNDAADMLDVLRFELGFTNTDRRFPKKKTCLEIYSRCVNSQTAVEEVVAQ
YFPHCAEWSSELKVLFAQYAEQKAEQFCLDYDDLLLYCFYMAQVPEIANKVRAQFDYILV
DEYQDTNLLQAGMLKAFFPDGRGLTVVGDDAQSIYGFRAASVDNILEFPQQFSPPAKVIT
LATNYRSHQCILDLSNQLLNEGQEGYKVELYSERKQGPKPQLVTVEDDTKQAEYIVESIL
RAREEGIELKRQAVLFRSSYHSDRLELELTRRDIPYVKHGGLKFLEAAHVKDLLSILRWA
DNPKHTISAFRVLKLLAGIGPKTANNIIEHLKAHQYQFSALSDCKVPISAKAEFKTLVES
LLTINSNAVPWAEQLSLLATLYSPLLELNYDDHFVRWGDVEQLVMISGQYSTRERFLTEL
TLDPPQSTGDLASNPKIDDDFLILSTVHSAKGQEWQNVYVLNVADGNFPNEYAVGDKRAL
EEERRLLYVAMTRAKQELHLMQPMKYWVPEQQSWGDKHVYGGKSRFMTDSLCEHLNRVHY
PKIAPDAQDKKIAAKAITDIRKTVLGMWKD
NT seq 2073 nt   +upstreamnt  +downstreamnt
atggcacaacccatcactcttaatcaccaacaacagctcgccgtcgattttggtatgcca
aaatcaggcaatacgagtaaccacttaccgctacttattattgctggcgcgggaacgggc
aagaccaataccttagctcacaagacggctcagctgttagttcaaggtgtaccgccagag
aaaatcttgttagtgacgtttgctcgcagggcatcagctgagctcgcttctcgcgcgaat
cgaattgcagagcagcagcttaatgagcagcgtaaacaatatcacccagtcaagcttgat
tggatggggacttttcattctatcgctgcaagattgttgcgtgaacatgctgcccttatc
ggcctcgaaagtgatttcactattatggatagaaatgacgcagcggatatgttggatgtg
ttgcggtttgagcttggttttaccaataccgatagacgttttccaaaaaagaaaacctgc
ttagagatatactctcgttgtgtgaatagccaaactgctgttgaagaggttgtcgcgcaa
tatttcccacattgtgcagagtggagctctgagctcaaggtattgtttgctcagtatgca
gagcagaaagcggaacaattctgtttagattacgatgatttgttactttactgcttttat
atggctcaagtgccagagatagcaaataaagtgcgagctcaattcgattacatattggtc
gatgaataccaagacaccaacttacttcaggcgggcatgctcaaagccttctttcctgat
ggaagagggttaaccgtggtcggtgatgatgcgcaatccatctacggcttccgagcggcg
agtgtcgacaacattctggaatttccacaacagttttctccacctgcaaaagtcattacg
ctcgcaaccaactatcgttcacatcaatgtattttggacttatccaatcaactacttaat
gaaggacaagaagggtataaagttgagctatattcggagcgaaaacaagggcctaaacct
caacttgtcacggtggaggatgacactaagcaagcggaatatatcgttgaatctattcta
agagcgagggaagagggcattgagctgaaacgacaagctgtgctgtttcgctctagctat
catagcgacagattggaacttgagttaacgcgccgtgatattccttatgttaaacatggt
ggcctgaagtttcttgaagccgctcatgttaaagatcttctttctattcttcgctgggct
gataatccaaaacacaccatatctgcttttcgagtgttgaaattgcttgctggtattggc
ccgaaaaccgctaacaatatcatcgagcatttaaaggcgcatcaatatcagttcagtgca
ctatctgactgtaaagtcccgatctcagcaaaagcggagtttaaaacgttagtcgaatct
ctactcacgataaacagtaacgctgtaccgtgggcagaacaattgagtcttcttgcaact
ctctatagcccattattagaactgaattacgatgaccattttgttcgttggggtgatgtc
gagcagcttgtaatgatttccggtcaatacagtacgcgtgaacggttcttgactgagttg
actcttgacccaccgcagtcgactggtgatttagcaagcaaccctaaaatcgatgatgac
tttttaattctctccacggtacacagtgcgaaagggcaagagtggcaaaatgtttatgtt
ctcaatgtcgctgatggcaacttccctaatgaatatgcagtgggcgacaaacgagcgtta
gaagaagaaagacgcttattgtatgtggccatgacgcgtgctaagcaagaactgcatctc
atgcagccgatgaaatattgggtacctgagcaacagagttggggtgataagcatgtgtat
ggaggcaagagccgttttatgacggactctttgtgtgaacacttaaaccgagtgcactat
ccgaaaatagcaccggatgctcaggataaaaaaatcgctgcgaaagcaattaccgatatc
cgtaaaaccgtacttggaatgtggaaggactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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