KEGG   Vibrio vulnificus 93U204: VV93_v1c06060
Entry
VV93_v1c06060     CDS       T03294                                 
Name
(GenBank) ssDNA exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vvl  Vibrio vulnificus 93U204
Pathway
vvl03410  Base excision repair
vvl03430  Mismatch repair
vvl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vvl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VV93_v1c06060
   03430 Mismatch repair
    VV93_v1c06060
   03440 Homologous recombination
    VV93_v1c06060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vvl03400]
    VV93_v1c06060
DNA repair and recombination proteins [BR:vvl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     VV93_v1c06060
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     VV93_v1c06060
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VV93_v1c06060
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB
Other DBs
NCBI-ProteinID: AIL69703
Position
I:647030..648769
AA seq 579 aa
MIEIQRRPEPDLSLLPSSVPDILKRIYLNRGIQDISQLETAVKGLHSYQKLHGIELAVEL
LFEAIREQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVE
QAITLGAEVIMTVDNGVSSIEGVRYAKERGLKVLVTDHHLPGQVLPDVDAMVNPNLQTCA
FPSKSLAGVGVAFYLMMALCVHMRKCGWFAEQGMPEPKLMELVDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFG
VELLMCNNIHAARRMANELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLALFQ
RDWHQGVIGILASRIKEKYHRPVIAFADGGDGYIKGSCRSVPGLHMRDALDLIDTQNPGL
ILKFGGHAMAAGLTIKEADFERFSQLFDQVVKRELDEAALKGIVLSDGELKPEEFSMHIA
ELLRSAGPWGQAFPEPVFDGEFKVLHQKLVGEKHLKLMLEPLFKGHPTNIMIDGIAFNVD
LRRWPDASVKTVRLAYKLDINEFRNNQSLQLMIEHIEAR
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgatagaaatacaacgacgaccagaacccgatctttccctcttgcccagcagtgtgccg
gatatcctcaaacgcatctatctcaaccgtggtattcaagacataagccagttggaaacc
gccgtcaaagggttgcattcataccaaaaactgcacggaattgaacttgccgttgagctg
ctttttgaggctatacgtgagcagaagcgaattattgtggtcggggattttgatgccgat
ggcgcgaccagttcggcactctcagtgcttgccctgcgcatgcttggctctcacaatgtt
gattacctagtaccgaaccgctttgaagatggctatggcttaagccctgaagtggtagaa
caagcgattaccttgggtgccgaggtgatcatgaccgtagataacggtgtctcatcgatt
gaaggggtgcgttatgccaaagagcgtggcttaaaagtactggtcaccgaccaccatttg
ccagggcaagtgttgccggacgtcgatgcgatggtcaatccgaacttgcagacctgtgca
tttccctccaaatctttggcgggcgttggtgtcgctttttatctgatgatggcgctgtgt
gtgcatatgcgcaaatgcggttggtttgctgagcaaggcatgcccgagccaaagctgatg
gaattggtggatttggtcgccttaggcactgttgcggacgttgtgccgctggatgaaaac
aaccgtattttggtccatcaaggtttgcagcgtattcgcgcaggcaaagcccgaccaggc
attcaagcgctgattgaagtggcgaaaagggatgcccgccgtttggtggcagcggacttt
ggatttgcactcggcccccgtatcaatgccgcggggcgactcgatgatatgtcgtttggt
gtcgagttactgatgtgcaataacatccacgccgcacgtcgaatggcgaacgaacttgac
ggcttgaaccaaacacgcaaagagattgaagaggggatgaagcaagaggcgatggcgttt
tgtgagcgtcttcagtttggagaaaacagcgaactgccctatggattggcgctgtttcag
cgtgattggcaccaaggggtgattggtattttggcgtcaagaatcaaagaaaaataccac
cgcccagtgatcgcctttgccgatggaggcgatgggtatatcaaaggatcttgccgctca
gtcccgggcttgcacatgcgtgatgcgctggatctgatcgatacgcaaaacccaggtttg
atcctcaagtttggtggtcacgccatggcagcgggactcaccatcaaagaggcggacttt
gaacgatttagtcagctgtttgatcaagtggtgaaacgcgaactcgatgaagcggcgctg
aaaggcattgtgctttctgatggtgaactcaagccggaagaattttctatgcacatcgct
gagctgctgcgatccgcaggtccttgggggcaggcgtttccagaacctgtttttgatggt
gaatttaaagtgctgcaccagaaattggtcggcgaaaaacatctaaaattgatgcttgag
ccattatttaaaggtcatccaaccaacatcatgattgacggcatcgccttcaacgtcgat
ttacgtcgctggccagatgcctcggtgaaaaccgttcgtcttgcttacaaattggatatc
aatgagtttcgtaacaatcaatcgttgcaattgatgattgaacacatcgaagctcgatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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