KEGG T01415: VVMO6

Vibrio vulnificus MO6-24/O: VVMO6_01219

Entry

VVMO6_01219       CDS       T01415

Name

(GenBank) ATP-dependent helicase HrpA

K03578

ATP-dependent RNA helicase HrpA [EC:5.6.2.6]

Organism

vvm Vibrio vulnificus MO6-24/O

Brite

KEGG Orthology (KO) [BR:vvm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvm03019]
    VVMO6_01219
Enzymes [BR:vvm01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     VVMO6_01219
Messenger RNA biogenesis [BR:vvm03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     VVMO6_01219

SSDB

Motif

Pfam:

DUF3418 OB_NTP_bind HA2_C Helicase_C DEAD AAA_19 HA2_N AAA_22 ResIII T2SSE nSTAND3 NACHT SLFN-g3_helicase AAA_30 PhoH Zeta_toxin TsaE AAA_25 NTPase_1 AAA_16

Other DBs

NCBI-ProteinID:

ADV86241

Position

I:1365506..1369438

AA seq 1310 aa
MTSSQPNTESHASEQKAQANSAASLRKALSQCLIKDRFRLSKRIAGASKINKESARNAVF
DEIALDIAKSMMEVEQRSRYQPKIEYPEILPVSQKKDDIADAIAHHQVVIVAGETGSGKT
TQLPKICAELGRGKFGLIGHTQPRRLAARSVANRIAEEMETQLGDFVGYKVRFNDQISEN
TQIKLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVII
TSATIDPERFSNHFGGAPIIEVSGRTYPVETRYRPLGGETEDDRDQLEGIFDAVDELCDE
GLGDILIFMNGEREIRDTADALAKRKLKDTEIVPLYARLSAGEQNKIFQPHTGRRIVLAT
NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVQEGIC
IRLYSEDDFNSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNILDGVRL
LEELGAINSNAKDPKKRLTAVGKQLARLPIDPRLARMVLEAPRFGCLKEVMIIAAALSIQ
DPRERPSDKQQSADDKHRRFYHEDSDFLTFVNVWNHIQKQQKALSGNQFRRQCKDDYLNY
LRVREWQDVYFQIHQSMREMEFKLNSEPGSYDAVHSAILTGLLSHIGMKDQEKNEYHGAR
NARFHIFPGSGLFKKQPKWVMSAELVETSKLWGRIIAKIQPEWIEPLAKHLIKRSHSEPH
WSKKQAAVMAYEKVMLYGIPIVPKRLVNYGNIDASVSREIFIRSALVEGDWETKHAFFKQ
NRKLLLEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDTWWKQASKKEPELL
NFEKEMLFKGDASHVTDLDYPNFWHQNGLKLKLSYQFEPGDDSDGVTVHIPLPILNQIDP
AGFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLSRVTAMEMPLLDALEKELR
RMTGATVLREDWKLDQVPDHLKVTFRAVDERNRKLKEHKDLHELKESLKEKVQETLSKVA
DDDIEQQGLHTWSFGELPQVYQQKRGGYQVKAFPALVDNKDSVEIKLYETEQEQISAMKA
GQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEEQGGLV
WEPEKFEALKEHVRAELGDTVVDIAKQVETILTTAFNINKKLKGKIDFTMAFALSDIKAQ
IEGLIFKGFATECGWKRLPDILRYMKAIERRMEKLPIDPNKDRLHMLKIESVVKDYKELL
NKIPKGLAVPENVKEIRWMIEELRVSFFAQQLGTPYPVSDKRVKNAIEAC

NT seq 3933 nt +upstreamnt +downstreamnt
ttgacttcgtcacagccaaatacagaatcccatgcttctgagcaaaaggctcaagcaaac
agcgccgcgtcattacgcaaggcgctcagtcagtgtttgatcaaagatcgctttcgtctg
agtaagcgcattgcaggtgccagtaaaattaataaagaatcggcacgcaacgcggtgttt
gatgagatcgcactggacatcgccaaatccatgatggaagtggaacagcgcagccgctat
caaccaaaaattgagtacccagaaatcctgcctgttagtcagaagaaagatgacattgca
gacgccattgctcatcaccaagtggtgattgtggcgggtgaaacgggctcaggtaaaacc
actcagctaccaaaaatctgcgccgaattaggccgtggtaagtttggtttgattggccat
actcagccacgccgcttagcggcacgctcggtggccaatcgcattgccgaagagatggaa
acgcaactgggggatttcgtcggttacaaagttcgatttaacgatcaaatctctgaaaac
actcaaattaaattgatgacagacggtatcttgctggccgagatccaacacgaccgtttc
ctcaatcaatatgacaccatcatcatagatgaagcgcacgagcgcagcctgaatatcgat
tttatcttgggttatttgaaagagttgctgccacgtcgtcctgatctgaaagtcatcatc
acgtcggcaaccattgacccagagcgattctccaaccactttggcggcgcgccgatcatt
gaagtgtcgggacggacttatcctgtggaaacgcgctaccgtccgttaggtggcgaaacc
gaagacgatcgtgaccaacttgaaggcatctttgacgcggttgacgagctgtgcgacgaa
ggcttgggcgacattcttatcttcatgaatggtgagcgtgaaattcgcgataccgcagat
gcgctggccaaacgtaagctcaaagatactgagattgtgccgctctacgcgcgcctttcc
gcgggcgaacaaaataaaatcttccagccgcatactggccgccgcattgtcttagcgacc
aacgttgctgaaacctcgttaaccgtgccgggcatcaagtacgtgattgaccctggtacc
gcgcgtattagccgctacagctaccgtaccaaagtacaacgtctgcccattgagccggtt
tctcaagccagtgccaaccagcgaaaaggtcgttgtggtcgtgtgcaagaaggtatctgt
attcgtctctactctgaggacgatttcaattcgcgccctgagtttaccgatcctgaaatt
ctgcgcaccaacttagcgtcggttatcttgcagatgaccgcgttgggccttggcgatatt
gaagcattcccatttgttgaagcgccagataaacgcaatattcttgatggtgtacgcttg
cttgaagagttgggtgccatcaacagcaacgccaaagatccgaaaaaacgcctcaccgcg
gtgggtaaacagttggctcgtttgccgattgaccctcgcttagcgcgcatggtgttggaa
gcgccaagatttggttgtttgaaagaagtcatgatcattgcagcggccttgtcgattcaa
gatccgcgtgagcgaccttcagacaaacaacaatcggcagatgataagcatcgtcgtttc
taccatgaagattctgatttcctcacctttgtgaatgtgtggaatcacattcagaagcaa
caaaaagccttgtcgggcaaccagttccgtcgtcagtgcaaagacgattacctcaactac
ttgcgtgtccgtgagtggcaagatgtttacttccaaatccatcaatcgatgcgtgagatg
gagttcaagctcaatagtgaacccggttcttacgatgcggtgcacagcgcgattttgact
ggcctgttatcgcatattgggatgaaagatcaggagaaaaatgagtatcacggcgcacgc
aatgcccgtttccatattttccctggctctggtctgtttaagaaacagccaaagtgggtg
atgtcggcagagctggtagaaacctcgaaactgtggggccgaattattgccaagattcaa
ccagaatggattgaaccactggcgaagcatttgattaagcgtagccacagcgagccccat
tggtcgaagaaacaagcggccgtgatggcgtacgaaaaagtgatgctctatggcattccg
attgtgcctaagcgcttggtgaattatggcaatatcgatgcgtcagtgagccgtgagatc
ttcattcgcagtgcgctggtggaaggggattgggaaaccaaacacgctttcttcaaacaa
aaccgtaaattgctgctcgaagtggaagagctggagcacaaatctcgtcgtcgcgatatt
ttggtcgacgatgaagagctgttccaattttacgatcaacgcgttggtacggaagtggtc
tctggacgccatttcgacacctggtggaagcaagcatcgaagaaagagcctgaactgctg
aactttgaaaaagagatgttgttcaaaggcgatgcaagccacgtgacggatttggattac
ccgaatttctggcatcagaatggcttgaaactcaagttgagctaccagtttgagccgggt
gacgacagcgacggcgtcacggtgcacattccattgccgattttgaaccaaattgatccg
gcgggcttcgattggcaaatcccgggcttgcgtcatgaattggtggtgagcttgattaag
tcgctaccgaagacgctgcgcaaaaactttgtgcctgcgccaaattatgccgatgcattt
ttatcgcgcgttactgcaatggaaatgccgttgctcgatgctttagagaaagagctacgc
cgtatgaccggggcgacggtgctgcgtgaagattggaaactggatcaagttcctgaccat
ctgaaagtgactttccgtgcggttgatgaaagaaatcgtaaactgaaagagcacaaagat
cttcatgagttaaaagaaagcctaaaagagaaggtgcaagaaaccttatcgaaagtggcg
gatgacgacatcgagcaacaaggcttacatacatggagctttggcgagttgccacaggta
tatcagcagaaacgtggcggttatcaggttaaggcgttccctgcgctggttgacaacaaa
gacagcgtagaaatcaagctctacgaaaccgagcaagagcagatcagtgcaatgaaagcc
ggtcaacgccgtttgatcttgttgaatgtgccatcgccgattaagtatctgcatgcgaac
ttgccgaacaaatcgaagctgggcctgtactttaacccgtatggcaaagtgcttgatttg
atcgacgactgcattgcttgtggcgttgacaagctgattgaagagcagggcggcttagtt
tgggagccagaaaaatttgaagcgttgaaggaacacgtgcgcgcagaattgggcgacacg
gtggtggatatcgccaagcaagtggaaacgattttgaccacggccttcaacatcaacaaa
aagctcaaaggtaagattgatttcaccatggcatttgctctgtcggacatcaaagcgcaa
atcgaaggtctgatcttcaaaggctttgccacggaatgtggttggaaacgactgccagac
atcttgcgttacatgaaagcgattgagcgtcgaatggaaaaactgcctatcgacccgaac
aaagatcgcttacatatgttgaagattgagtcggtagtcaaagactacaaagagctattg
aacaagattccgaaaggattagcggtaccggaaaatgtgaaagagattcgttggatgatc
gaggagctgcgagtcagtttcttcgctcagcagctcggaacaccttatccggtctccgat
aaacgagtaaaaaacgctatagaagcttgctaa

All links

Ontology (1)   
   KEGG BRITE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (20)   
   Pfam (20)   
All databases (25)   

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