KEGG   Vibrio vulnificus MO6-24/O: VVMO6_02172
Entry
VVMO6_02172       CDS       T01415                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
vvm  Vibrio vulnificus MO6-24/O
Brite
KEGG Orthology (KO) [BR:vvm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vvm03016]
    VVMO6_02172
Enzymes [BR:vvm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     VVMO6_02172
Transfer RNA biogenesis [BR:vvm03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    VVMO6_02172
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNAseD_HRDC_C HRDC
Other DBs
NCBI-ProteinID: ADV87194
Position
I:complement(2338867..2340039)
AA seq 390 aa
MPAEFQGWHFYFQSDSERRVNYQIITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQL
GLIQLFDGDTLSLIDPTVLTDMSAFTELLNDASVMKVLHACGEDLEVFHNAFGAIPVPMV
DTQIMAAFLGHGLSTGFAALVEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLP
LYEILLEKVMEAGWWQAAQQESELQASKRVKTPNADNAYLDIKGAWQLKPRELAILKPLA
TWRMQEAIRRDLALNFVFKEHDLLTVARLGLTSFKRMEEEGMDVRSVQRHGNRIAAIVKS
ARETDPEDYPAPIERLMDLPGYKQLFKKLKDEVTHASKATGLVSEFLASKKQTNQLISWV
WKHQRDQNRLPDLMQGWRLDILGEKMNKLI
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgccagccgaattccaaggctggcatttttattttcaaagcgatagcgagagacgagtg
aattaccaaattattaccgaaaaccaagacctagttagggtatgcagtaaagcacgcgaa
gcagacgttgtgatgttggataccgagtttgtccgcacccgaacgtattacccacaattg
ggcttaattcagctttttgatggtgacaccctctcgctgattgatccaacggtgctgact
gatatgagtgcgtttactgagttgcttaacgatgcctcggtaatgaaagtgcttcacgcg
tgcggtgaggatttggaagtgttccacaatgcgtttggtgcgatacccgtgccgatggtg
gatacgcaaatcatggccgcgtttttgggtcacggtctatcgacgggctttgccgcattg
gtcgagcagtaccttaacgtggaactggataagagtgagtcgcgcacggactggttggct
cgccctctgagtgacaaacagcttgagtacgccgcggcagatgttcactacttgttgccg
ctgtacgagatcttgttggaaaaagtgatggaagcgggctggtggcaagcggctcagcaa
gagagcgaactgcaagcaagcaagcgtgtaaaaacgccgaatgccgacaatgcttacctc
gatatcaaaggggcttggcagcttaagccaagagagctagcaatactcaaaccgcttgcg
acttggcgtatgcaagaggcgattcgtcgtgacttagcgttgaactttgttttcaaagaa
cacgacttactcacggtggcacgtttaggtctgacgagctttaagcgcatggaagaagag
gggatggatgtccgctcagtacagcgtcatggcaatcgcattgctgcgatagtgaagtcg
gcgcgtgagactgatcctgaggattatccagcaccaattgaacgcttgatggatttgcca
ggttacaaacaactgtttaaaaaactgaaagacgaagtcactcacgcttcgaaagcgaca
ggtttagtgagcgagtttttagcgtcgaagaagcagactaatcaactgatcagttgggta
tggaaacatcagcgcgatcaaaatcgcctgccagacttgatgcaaggttggcgcttagac
attctgggcgaaaaaatgaacaagctaatttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (10)   

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