KEGG   Vibrio vulnificus CMCP6: VV2_0146
Entry
VV2_0146          CDS       T00108                                 
Symbol
rnb
Name
(GenBank) exoribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
vvu  Vibrio vulnificus CMCP6
Brite
KEGG Orthology (KO) [BR:vvu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vvu03016]
    VV2_0146 (rnb)
Enzymes [BR:vvu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     VV2_0146 (rnb)
Transfer RNA biogenesis [BR:vvu03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    VV2_0146 (rnb)
SSDB
Motif
Pfam: RNB OB_RNB S1 CSD2 DUF2274
Other DBs
NCBI-ProteinID: AAO07119
UniProt: Q8D7K6
Position
II:complement(159574..161568)
AA seq 664 aa
MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDSKTSFFIPPAYMKKCMHGDKV
IAIIRTENEREVAEPQELVEQMLNRFIGRVKMFKGKLNVVPDHPQLKKMSLKAKTKKGLN
PQEFAEGDWVVGHLIRHPLKDDNGFFVEISEKITDADDKIAPWWVTLAENDLPNSEPAGI
DDWQIKDDADLERIDMTHIPFVTIDGESTKDMDDALYAKKNDAGDFELTIAIADPTAYIT
PDDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIEGEIRPALCCTVTVSKDGVIGD
DIQFFAANIKSHARLAYDNVSDWLETGSCEKWQPSEEIAAIVRDLYEFSQARAEWREKNA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANRLVEESMITANICAGKTLQGHFGTGVFNC
HAGFKPEKIADVVELVNPEGTLEFTAESIATREGFAALRRWLSKQETTYLDNRIRKFQTY
SEVSNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKALILNKEPVQKPDDSVGEELAL
HRKHHKIAERNVADWLYARTLADAPENQTLFTGEIFDINRAGMRIRLLENGAAAFIPGSL
IIDNKERIECNGDLGTVSIDKEVVYKLGDVLEVVLADVNQENRSLVAKPTQVFAELPVVE
ETQN
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgtttcaagataacccacttttagcccagcttaagcaacaaattcaggaaaatctgcca
aagaaagaaggcacgattaaagcaaccgaaaaaggttttggctttctcgaagtcgatagc
aagacaagtttctttattccaccagcctacatgaagaaatgtatgcacggtgataaggtg
atcgccattatccgcaccgaaaacgaacgcgaagttgccgagccacaagagcttgttgag
cagatgctaaatcgcttcatcggtcgtgtgaaaatgttcaaaggaaaattgaatgttgtt
cctgatcatccgcaactgaagaagatgtctctcaaagccaaaacgaagaaaggtcttaac
cctcaagaatttgctgaaggcgactgggttgtcggccatttgatccgtcacccactaaaa
gatgacaacggtttcttcgtggaaatcagcgaaaaaattaccgatgccgatgacaagatc
gcaccttggtgggtaacgctggcggaaaacgatctacctaactctgagcctgccggtatc
gacgattggcaaattaaagatgatgcggatcttgaacgtatcgacatgacgcatatccct
tttgtgaccatcgatggtgagtccacaaaagacatggacgatgcgctttacgcgaagaaa
aacgacgctggcgattttgaattgacgattgccattgccgatccaaccgcttacatcaca
ccagatgatgaaatggacaaggttgcacgtgagcgtggctttaccatttatcttccagga
cgcaatatcccaatgctgcctcgtgaccttgctgatgaactgtgttcgctaatcgaaggt
gaaatccgccctgccctttgctgcacagtcaccgtcagtaaagacggcgtgattggcgat
gatatccagttctttgcggcaaacatcaagtcgcacgcccgtttggcgtatgacaatgtc
tccgactggctcgaaacaggcagctgtgaaaaatggcagccaagcgaagaaattgcggct
atcgtgcgtgacctgtatgaattctcacaagctcgcgcagaatggcgagagaagaatgcg
gtagtcttcccagatcgtcctgattaccgttttgagttgagtgaagataacgatgtcgtt
gcgattcacgctgacatgcgccgcagcgcaaaccgcttggttgaagagtcgatgatcaca
gccaacatttgcgcgggtaaaacgctgcaaggccatttcggcaccggcgtatttaactgc
catgcaggcttcaagccagagaagattgccgatgttgtggagctggttaacccagaaggt
acgttggagttcacggctgagtcgattgccactcgtgaaggttttgctgcactccgccgc
tggttaagtaaacaagaaacgacttatcttgataaccgcattcgcaaattccaaacctac
agtgaagtgagcaaccagcctttgccacactatgcgatgggccttgatatctacgcaact
tggacgtctccaattcgtaaatatggcgatatgatcaaccatcgtatgcttaaggcttta
attctaaacaaagagcctgtgcaaaaaccggatgatagtgtcggcgaagagcttgctcta
caccgcaagcatcacaaaattgcagaacgtaatgttgcagactggctgtatgctcgcact
ctagcagacgctccagaaaatcaaacgctgtttaccggtgaaatcttcgatattaaccgt
gctggtatgcgcatccgtttacttgagaatggcgctgcggcattcatccctggttctctt
attattgataataaagaaagaattgagtgcaatggtgacctaggtactgtttctatcgat
aaagaagtggtatacaaactgggagacgttcttgaagtcgtgttagctgacgttaaccag
gagaacagaagcctggttgcgaaacctacccaagtattcgctgaattacccgtggtagaa
gaaactcagaattaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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