KEGG   Wallemia ichthyophaga: J056_003261
Entry
J056_003261       CDS       T03457                                 
Name
(RefSeq) DNA repair helicase rad15
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
wic  Wallemia ichthyophaga
Pathway
wic03022  Basal transcription factors
wic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    J056_003261
  09124 Replication and repair
   03420 Nucleotide excision repair
    J056_003261
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:wic03021]
    J056_003261
   03400 DNA repair and recombination proteins [BR:wic03400]
    J056_003261
Enzymes [BR:wic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     J056_003261
Transcription machinery [BR:wic03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     J056_003261
DNA repair and recombination proteins [BR:wic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     J056_003261
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 nSTAND3 ResIII DEAD YtxC
Other DBs
NCBI-GeneID: 20376213
NCBI-ProteinID: XP_009266759
UniProt: R9AKH2
Position
Unknown
AA seq 1177 aa
MNEFKEVNEVKEVNDFNEFNSGDLQHSDEDFDNEFDNDTLPSIPGKKGRKLGAKYSLIPQ
GSQNIDINMNKRKRQAPLPFNSSVNNAIASSSKVTSRTRPPKADPYRPQIPAPDFAKPDY
SHVEELFEPFIKKQLELQDQGQTPPPVKFPVNQRPDYVVSSAPRIPQNYIVPVPLDTHSK
SNYKTRRWSEHTKHIRSLSGSTLRLKSWLGSQHSEYSNRPPPLIPTTTTNSNQGFEESIN
PANIITPSGVPLNKLDKRTREYKMIMAQHKSQLEQKRMDQQRQKIDDNHQSGVGGLANSG
GVDSGANSVDNTVDNIVDSVIEKKEDDDTVDIADNSETVDNADNLETANNVYNPEKTEIS
VFYLDDLPVCFPYDRIYPEQYSYMRDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQ
HYDADRKLVYCSRTVPEIEKALAELKRLMAYRADQGYAAKDSGYTGLGLSSRKNLCLHPS
ISQERRGKAVDARCRDLTSAHAVQRGRDDPSSHELCSYHENLSELAPGEIIPPGIWTIED
VRKFGQQKGLCPYFSVRRMVQFCNTIIYSFHYLLDPKVAEMVSREMSKDAIVVFDEAHNI
DNVCIESLSIDLTRPMLESASRSVDRLSDKISEAKQNDAQRLQDEYAKLVEGMQDSDAPP
PNDEMAMIRRQEEDVLSNPVLPDDLLKEAIPGNIRKAEHFIAFLKRFVEYLKTRMRVLHV
VAETPLSFLQHLRDITFIERKPLRFCSDRLSNLIKTLELERLDEYSSLQSVAAFATLVST
YEKGFLLILEPFETETATIPNPIFHLTCQDASIAIAPVFDRFSSVIITSGTISPLDMYPK
MLNFNAIVQESYPMTLSRNCFIPMVITRGSDQVAVSSRFEVRNDPAVVRNYGQMLIEYSK
VIPDGIVAFFPSYLYMESIVSAWNEMQILDEVWKHKLIFVETPDAPETSIALENFRKACD
NGRGAVMLSVARGKVSEGIDFDHHFGRAVIMFGVPYQYTESRILKARLEYLRDNHRIRES
DFLTFDAMRHAAQCVGRVLRGKSDYGLMIFADKRFARSDKRAKLPRWINQYIAETSSNLS
TDMAISLAKRFVRTMAQPFDHSQTGVSLWTMDHVLERQRLDKESDLAAVALTDKDHMNVD
GVVDGVADGVGDSSGDSDIDDTGGIDDNALIDIPMTQ
NT seq 3534 nt   +upstreamnt  +downstreamnt
atgaatgagttcaaagaggttaacgaggtcaaagaagttaacgacttcaatgagtttaac
tcgggtgatttacaacattcagatgaagatttcgataatgaattcgataatgatacactg
cccagtatacctggaaagaaaggcagaaagctaggtgcaaaatactcattaatcccacaa
ggatcacagaatatagatataaatatgaataaacgtaaaagacaagcacctttacctttt
aatagctcagttaataacgctattgcttcttcttcaaaagttacttcacgtacacgtcca
cctaaagctgatccatatcgtccacagatccctgcacctgattttgctaaacctgattat
agccacgttgaggagttatttgaaccttttataaagaaacaacttgaactccaagatcaa
ggtcagacacctccaccagttaaattccccgttaatcaacgccctgattacgttgtttct
tctgcaccgcgtataccacagaattacatagtaccagttccattagacactcactcaaaa
tcaaattacaaaacacgcaggtggtcggaacatacgaagcatattagaagtttgagtggt
agtacactccgtttgaaatcttggctgggctcgcagcacagtgaatacagcaatagacct
ccgccacttatccctacaactacaaccaacagcaatcaggggttcgaagaatctatcaat
ccagcaaatatcattactccttcaggcgtccctcttaataagctcgataagcgtacgaga
gagtataaaatgattatggctcaacataaatctcaattggagcaaaagagaatggatcaa
cagcgccagaagattgatgataaccatcaaagtggtgttggtggtcttgctaacagcggc
ggtgttgacagtggtgccaatagcgttgataatactgttgataacatcgttgatagcgtt
attgaaaaaaaggaagacgatgatactgtggatatcgcagataattcagaaaccgtcgat
aatgcagacaacctggagactgccaataacgtatataacccagagaaaactgaaatatca
gttttctatctcgatgatcttcccgtttgtttcccgtacgatcgtatatatccagagcag
tacagctacatgcgcgatctcaaaaagacactcgacgctggtggccactgcgtactagaa
atgccttctgggaccggaaagactgtgtcgctgctatcacttatcgtcgcctatcagcag
cattacgacgcagacagaaagctggtatactgctcgcgcacagtaccagaaattgaaaaa
gctcttgcagaattgaagagattgatggcttacagagctgatcaaggttacgccgctaaa
gatagtggctataccggcttaggacttagttcacgtaaaaatctctgccttcatccttca
attagccaggagagacgcggtaaagctgttgatgctaggtgcagagatctcacttctgct
catgctgtacagagaggcagagacgatccatcgagtcacgagctctgtagctatcatgag
aacttgtcagagctagcaccaggtgagatcatccctcctggaatctggacaattgaggat
gttcgcaagtttggtcaacagaaaggtctttgtccatatttcagcgttagacgaatggtc
caattttgcaacactataatctactctttccactatctcctagatcctaaagttgccgag
atggtatctagagaaatgtcgaaggacgctatcgtcgtgtttgacgaagcacacaacata
gataacgtctgcattgagtcactcagtatagatctaacccgtccaatgctcgaaagtgct
tcgaggagtgtcgatagactatcagataaaatctcagaagctaaacagaacgacgctcag
aggctacaagatgaatatgccaaattggttgaagggatgcaagattccgacgcacctcca
ccaaatgatgaaatggccatgataaggcggcaggaagaggatgtattaagtaatccagta
ctacccgacgaccttctcaaagaggctatacctggaaatattcgcaaggcagagcatttc
attgccttcttgaaaagatttgtcgaatatttaaagactcgcatgcgtgttctgcacgtc
gtcgcagagaccccactgtccttcttacagcaccttcgggatatcacctttatcgagagg
aagccattgaggttttgctcagacagactctcaaaccttattaaaactttagagctcgag
aggctggacgagtattcgtctttgcagtctgttgctgcatttgcaacacttgtttcaaca
tatgaaaagggcttcctgctcatacttgagccatttgaaacagaaactgcaacaatacca
aatccaatatttcacctcacttgtcaagacgctagtatagcaatagccccagtctttgac
aggttctcatcagtaatcatcacatctggtaccatatcaccattagatatgtatccaaag
atgctcaatttcaacgcgatagtgcaagaatcgtatccaatgacactatctaggaactgt
ttcattccaatggttataacaagaggcagtgaccaagtagcagtcagttcacgatttgag
gtaaggaacgacccagccgtcgtccgcaattatggacagatgttgatagaatactcgaaa
gttattcctgacggtatagtagccttctttcctagttatttgtacatggagagtatagta
agtgcgtggaatgagatgcaaatactcgatgaagtgtggaagcacaagcttattttcgtt
gaaacacccgacgcacccgagacaagcatagcattagagaacttccgtaaagcttgcgat
aatggacgtggagcagttatgttatcggtggcacgagggaaagtgagtgaaggaatagat
tttgatcatcattttggtcgggctgttataatgtttggagttccataccaatacacagaa
tctcgtatactcaaagctcgtttagaatacctacgtgataatcacagaatacgtgaatca
gatttcttaactttcgacgcaatgagacacgctgcgcagtgtgtaggtagagttttgaga
ggtaaatctgattacggtttgatgatctttgccgataagcgattcgcgagatcagataaa
agagcaaagttaccacgttggattaatcaatacatcgctgaaacatcatcgaatctttca
accgatatggctatatctctcgcaaagaggtttgtcaggactatggctcaaccatttgat
cattctcaaactggggtcagtttgtggacaatggatcatgttttagagagacagaggttg
gataaggagagtgatctcgcagctgtagcactcactgataaagatcatatgaacgtcgat
ggagttgttgacggagttgcagatggagttggcgattctagcggtgatagtgatatcgat
gatactggtgggattgatgataacgcattgatagatatccctatgacgcagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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