KEGG   Winogradskyella sp. PG-2: WPG_3517
Entry
WPG_3517          CDS       T03603                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
win  Winogradskyella sp. PG-2
Pathway
win03030  DNA replication
win03410  Base excision repair
win03420  Nucleotide excision repair
win03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:win00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    WPG_3517
   03410 Base excision repair
    WPG_3517
   03420 Nucleotide excision repair
    WPG_3517
   03430 Mismatch repair
    WPG_3517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:win03032]
    WPG_3517
   03400 DNA repair and recombination proteins [BR:win03400]
    WPG_3517
Enzymes [BR:win01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     WPG_3517
DNA replication proteins [BR:win03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     WPG_3517
DNA repair and recombination proteins [BR:win03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     WPG_3517
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     WPG_3517
   MMR (mismatch excision repair)
    DNA ligase
     WPG_3517
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      WPG_3517
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 PADR1_N
Other DBs
NCBI-ProteinID: BAO77747
UniProt: A0A024FLY2
Position
complement(3801684..3803678)
AA seq 664 aa
MSIEEKINSLRDELRQHNHNYYILDNATISDYEFDIKLKELQALEDANPEFLDVNSPTQR
VGGAITKNFKTTVHDFRMYSLDNSYSKEDLLDWETRIKKMVDGEIQYTCELKYDGASMNL
TYENGKLLRAVTRGDGVQGDQVTANVKTINTVPLQLKGYYPERFDIRGEIILPIEGFLKM
NEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYSIKGNNLNISTQFEGLEKA
RAWGFKVPKEAKLVSSIDEVLKFVEYWDKERHNLPYEIDGVVVKVNSLYQQDELGFTAKA
PRWAMAYKFKAEQVSTQLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIEK
LDIREGDEVFVEKGGEIIPKIIAVDLTKRPEYSKPTLYINNCPECNTQLKRIEGEAKHYC
PNYNGCPPQVIGRIQHYISRKAMDIEGLGGETVALLVKEDLINDYSDLYELTVDQVTPLE
RMAEKSAENLINGVEASKEIPLERVLFALGIRYVGETVAKKLAKHYKSIDALMFASILDL
VTVDEIGERIAESVVEFFSSEENRNIVERLKRFGVQLEISADKLANQTEKLKGQIFVVSG
VFETLSRNDLKKMIEDNGGKVSSSISSKTSYVVAGDKMGPSKRTKAENLEISILTEQAFL
QLLM
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgagtattgaagaaaaaataaattctcttagagacgaactccgtcaacataatcacaat
tattatattttagataatgcaacaattagtgattatgagttcgatattaaattaaaagaa
cttcaagctttagaagatgcaaatccagagtttctagatgtcaattcaccaacacagcgt
gttggaggagcaataacaaagaattttaaaacaactgttcacgactttagaatgtattct
ttagataattcttattctaaagaagacttgttggattgggaaactagaatcaaaaaaatg
gtggatggtgagattcaatatacttgcgaattaaagtatgatggtgcctcaatgaatctt
acgtatgaaaacgggaaattgttaagagctgtcacgagaggagatggagttcagggtgat
caggttacggcgaatgtaaagactattaatacagttccattacaattaaaagggtattat
cccgagcgttttgatattagaggcgaaatcattttaccaattgaaggtttcttgaaaatg
aacgaagaacgtatagcaaatgatgaagagccttatagaaacccaagaaacacagcttct
ggaagtttaaaattgcaagatagtgctgaagtagctaaacgacctttagaatgtttacta
tatagtattaaaggtaataatttaaatatatcaactcaatttgaaggtttagaaaaagct
agagcttggggatttaaagtaccaaaagaggcaaaattggtaagttctattgatgaagtt
ttaaagtttgtagagtattgggataaagaacgtcataatttgccttatgaaattgatggt
gtcgtagtgaaggtaaatagtctatatcaacaagatgaattagggtttactgctaaagca
ccacgttgggctatggcttataaatttaaagcagaacaagtttctactcaacttaatgag
attacttaccaagtaggtcgtactggagctataacgcctgtggctaatttagagcctgta
caattggctggtactattgtgaagcgagcatctttgcataatgcagatcagatagagaaa
ttagatattagagaaggtgatgaggtgtttgtagaaaaaggaggtgaaattatcccaaag
attattgcagttgatttaacaaaacgaccagaatattctaaaccaactctttatattaat
aattgcccagaatgcaatacacagttaaaacgtattgaaggtgaagccaaacattattgt
cctaattataatggatgccctcctcaagttattggaagaattcagcattatatatctaga
aaagcaatggatattgaaggtttgggtggtgaaacagttgcgctattggttaaagaggat
ttaataaacgattattctgatttgtatgaattaactgttgatcaagtcactccattagag
cgtatggcagagaagagcgctgaaaacttaattaatggggtagaggcctctaaagagatt
ccgttagaacgcgtattatttgctttaggtattcgttatgttggggaaactgttgcaaag
aaacttgcaaagcattataaatctattgatgctttaatgtttgcttcaattttagattta
gttactgttgacgaaataggtgaacgtatagctgagagcgttgttgagtttttctcatcc
gaagagaatcgaaatatagttgaacgcttgaagaggtttggtgtgcaattagaaatttct
gcagacaaattagcaaatcaaaccgaaaagctaaaagggcaaatttttgtagtctcagga
gtgtttgaaactttatctcgtaatgatttaaaaaaaatgatagaagataatggagggaaa
gtttcttcatctatctcatctaaaactagttatgtagttgcaggtgataaaatggggccc
agtaagcgaacaaaagctgaaaatctggaaatatctatcctaactgaacaagcgttttta
caattattgatgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (65)   

Download RDF
DBGET integrated database retrieval system