KEGG   Weissella paramesenteroides: CO680_00005
Entry
CO680_00005       CDS       T05120                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
wpa  Weissella paramesenteroides
Pathway
wpa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:wpa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CO680_00005 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:wpa03021]
    CO680_00005 (rpoB)
   03400 DNA repair and recombination proteins [BR:wpa03400]
    CO680_00005 (rpoB)
Enzymes [BR:wpa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CO680_00005 (rpoB)
Transcription machinery [BR:wpa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CO680_00005 (rpoB)
DNA repair and recombination proteins [BR:wpa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CO680_00005 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ATF42283
Position
join(1945323..1947910,1..1051)
AA seq 1212 aa
MHSWPIQSEVENLVGTLVKYGKHRVRRSYARIKEVLDLPNLIEIQTDSYNWFLDEGLREM
FMDILPIEDFQGKLSLEFVDYKLMEPKYTVEEARNHDANYSAPLHVTLRLTNQETGEIKS
QDVFFGDFPLMTPSGTFIINGAERVIVSQLVRSPGVYYNEELDKNGRPNYGTTFIPSRGA
WLEFETDAKGLSYVRIDRTRKLPITELVRALGYGSDSEILQMLGDQYDSISLTLDKDVHK
DIEDSRVEEALKDIYERLRPGEPKTADSARALLTARFFDPKRYDLAPVGRYKINKKLSLK
SRLMGLTLGETLADPDTGEIIAEKGTLIDKKVMSALSPYLDREDFKRTTFTPSDDAVVTE
PMVLQTILVENPEDPEKTLPIIGNGQFDPAIRTVKPADIIAGMNYFLNLPLGVGTTDDID
HLGNRRIRRVGELLQNTFRIGLSRMERVVRERMSIQDPDTVTPQQLINIRPVVAAVKEFF
GSSQLSQFMDQTNPLGELTNKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMDPIETPEG
PNIGLINSLATYGRVNKYGFIETPYRRVDWTTHKVTDRIDYLTADEEDNFVVAQGNSVLN
EDGSFATDTVLARKSDENVEVPIDQVDYMDVSPKQIVAVATAAIPFLENDDSNRALMGAN
MQRQAVPLIDPHAPLIGTGIEYKAAHDAGVAIISQYPGVVEYVDGREIRVRREDGSLDKY
ALMKFRRSNAGKNYNQRPIVKVGDKVDADEVLADGPSMEQGELALGQNPLIAFMTWQGYN
FEDAIIINERLIRDDVYTSIHIEEYESEARDTKLGPEEFTREIPNTGEDQLKNLDERGII
RIGAEVEDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLKVPHGGGGVVQDV
RIFTRENGDELSPGVNMMVRVYIAQRRKIQVGDKMAGRHGNKGTVSVIVPSEDMPFMPDG
TPIDIMLSPMGVPSRMNIGQVLELHLGMAARELGIHVASPVFDGARDTDIWDAIQEAGLP
ADGKSILYDGRTGEAFDKRVSVGIMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQF
GGQRFGEMEVWALEAYGAAHTLQEILTYKSDDVVGRVKTYEAIVKGEQIPKPGVPESFRV
LVKELQALGLDMKVLDADEREIELRDMDEDDSVLNIASADKKTDKLAQEFNAEGAGNTAN
SDSVANTNDSAN
NT seq 3639 nt   +upstreamnt  +downstreamnt
gtgcacagttggccaattcaaagcgaggtggaaaacttggtaggaacgcttgtaaagtat
ggtaaacaccgtgttcgtcgtagttacgcacgaatcaaggaagtccttgatttgcctaac
ttgatcgaaattcaaacggactcatacaactggttcttggatgaaggattacgtgaaatg
ttcatggacattttaccaatcgaggacttccaaggtaagttgtctctagaatttgtggac
tataagctcatggagccaaagtacacagtagaagaagcacgtaaccatgatgctaattat
tcagcaccattgcacgttacgttgcgcttaacaaatcaagaaactggcgaaattaagtca
caagatgttttctttggtgatttcccattaatgacaccatcaggtacctttattattaat
ggtgctgagcgtgttattgtttcacaattagtacgttctcctggtgtgtactacaatgaa
gaattagacaagaacggacgcccaaattacggtacaacattcattccaagtcgtggtgct
tggttggaatttgagacagatgctaagggtcttagctatgttcgtattgaccgtacgcgt
aagttgccaatcacagagttggtacgtgcattgggttatggttcagactcagaaatccta
caaatgttaggtgatcaatatgattctatctcattaactttggacaaagatgtgcacaaa
gacatcgaagattcacgagttgaagaggccttgaaagacatctacgaacgtttacgtccg
ggagagcctaagacagctgattcagcacgtgccttgttaactgcacgtttctttgaccca
aagcgttatgatttagcaccagttggtcgttacaagatcaataagaagttgtcattgaag
tcacgcttgatgggcttgactttgggtgaaactttggctgacccagatactggtgaaatt
attgccgaaaagggtacattgattgacaagaaggttatgtcagcattgtcaccttacttg
gatcgtgaagatttcaagcggacaacgttcacaccttctgacgatgcggttgttacggaa
ccaatggttttgcaaacaattttggttgagaatccagaggatccagaaaagacattacca
atcattggtaacggtcaatttgatccagctattcgtacagttaagccagccgatatcatc
gctggtatgaactacttcttgaatttgccattaggcgttggtacgactgatgatattgac
cacttgggtaatcgtcgtattcgtcgtgttggtgaattgctacaaaacacattccgtatt
ggtttgagccgtatggaacgtgtggttcgtgaacgtatgtcaattcaagacccagacact
gttacaccacaacaattgattaatattcgtccagttgttgctgctgttaaagagttcttc
ggttcatcacaattgtcacaattcatggatcaaacaaatccattgggtgaattaacgaat
aagcgtcgtttgtcagccttgggacctggtggtttgactcgtgaccgtgccggatatgaa
gttcgagacgttcactatacacactatggtcgtatggacccaattgaaacacccgaaggt
cctaacattggattgatcaactcattagctacgtatggacgtgttaataagtacggtttc
attgagacaccatatcgtcgtgttgattggacaactcacaaggttactgaccgaattgac
tacttaacagccgatgaagaagataatttcgtggttgcccaaggaaattctgtcctaaat
gaagatggttcatttgctactgatactgttttggctcgtaagagtgatgaaaacgttgaa
gtgccaattgatcaagtcgattacatggatgtttctcctaagcaaatcgtagcggtcgct
actgctgccattcctttcttggaaaatgacgactcaaaccgtgccttgatgggtgccaac
atgcaacgtcaagcagttcctttgattgatccacatgcaccattgattggtactggtatt
gaatataaggctgctcacgatgctggtgttgcgattatttcacaatatcctggtgttgtt
gagtacgttgacggtcgcgaaatccgcgttcgccgtgaagatggttcattagataagtat
gctttgatgaagttccgtcgttcaaatgctggtaagaactataaccaacgtccaattgtt
aaggttggtgacaaggttgatgctgatgaagtattggccgatggtccatcaatggaacaa
ggtgaattggcattgggtcaaaacccattgattgccttcatgacttggcaaggatataac
ttcgaggacgctatcattattaatgagcgtttgattcgtgatgatgtttatacatcaatc
cacattgaggaatacgagtcagaagcgcgtgatacaaagcttggccctgaagaatttaca
cgtgaaattccaaacactggtgaagatcagttgaagaacttggatgagcgcggaattatt
cgcatcggtgctgaagttgaagacggtgatattttggttggtaaggtaacgcctaagggt
gtgactgaactatcagctgaggagcgtttgctacatgctatctttggtgagaaggctcgt
gaagtacgtgatacttcattgaaggttcctcacggtggtggtggagttgtccaagatgtt
cgtatcttcactcgtgaaaatggggatgaattgtcaccaggtgttaacatgatggttcgt
gtctacattgcccaacgtcgtaagattcaagttggtgataagatggccgggcgtcatggt
aacaagggaacggtatcagttattgtaccttctgaagatatgccatttatgccagatggt
acgccaattgatattatgttgtcaccaatgggtgtgccttcacgtatgaatattggtcaa
gtacttgagttgcacttaggtatggctgcccgtgaactaggtattcacgttgcatcacct
gtctttgatggggctcgtgacacggatatttgggatgccattcaagaagctggtttgcca
gccgatggaaagtcaattctttatgatggtcgtactggtgaggcattcgataagcgtgta
tctgttggtatcatgcattatatgaaactagctcacatggttgacgataagattcacgcc
cgttcaatcggaccttactcattggttacgcaacaaccgcttggtggtaaagcacaattc
ggtggtcaacgtttcggtgaaatggaagtttgggcccttgaagcttatggtgctgcgcac
acgttgcaagaaattttgacatacaagtctgatgacgttgtcggacgtgttaagacttat
gaagccattgtcaagggtgagcaaattcctaagccaggtgtacctgaatcattccgcgtg
ctagttaaggaattgcaagcacttgggttggacatgaaggtcttagatgctgatgaacgc
gaaattgaactgcgtgatatggatgaagatgattcagtccttaatatcgcttcagcagat
aagaaaactgacaaattagcacaagaatttaatgctgaaggtgctggtaacacagcaaat
tcagatagtgttgcaaacactaatgatagtgctaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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