KEGG   Xanthomonas citri subsp. citri UI6: J158_03285
Entry
J158_03285        CDS       T03894                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
xcj  Xanthomonas citri subsp. citri UI6
Pathway
xcj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xcj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J158_03285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xcj03019]
    J158_03285
   03400 DNA repair and recombination proteins [BR:xcj03400]
    J158_03285
Enzymes [BR:xcj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     J158_03285
Messenger RNA biogenesis [BR:xcj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     J158_03285
DNA repair and recombination proteins [BR:xcj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      J158_03285
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C ResIII
Other DBs
NCBI-ProteinID: AJY87655
Position
3652754..3654550
AA seq 598 aa
MSSPAHELLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRDGIG
IVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENAQRVERALLSGDLDLLYVAPERLLT
QRFLSLLERSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHVPRMALTATADPPT
QREIAERLDLVDARHFVSSFDRPNIRYTVVQKDNARKQLQEFLGRHRGSAGIVYAMSRRK
VEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAFGMGIDKPDVRFV
AHVDLPKSLEGYYQETGRAGRDGDPAEAWLCYGLGDVVLLKQMIEQGEAAEERKRLERAK
LDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPAAAWDATVASQKALSCVYRSG
QRFGVGHLIDILRGSENERIKQLGHDQLSTYGIGRDLDERTWRGVFRQLVAASLLEVDSE
GHGGLRLTDASRQVLKGERQVMMRRENPAAGRERSAQRTGLPVQPQDLALFNALRGLRAD
LAKEQNVPAFVIFHDSTLRNIAEQRPTSIDALSRVGGIGGGKLARYGAQLIEIVREQG
NT seq 1797 nt   +upstreamnt  +downstreamnt
atgtcttcccccgcccacgaactgctcagccgcgtctttggctacgacgacttccgcggc
ccgcagcaggccattgtcgaacacgtcgctgccggcaacgatgccctggtcctcatgccc
accggtggcggcaaatcgctgtgctaccaggtgccggcgctgctacgcgacggcatcggc
atcgtggtctcgccgctgatcgcgctgatgcaggatcaggtcgaggccctgcgccagctc
ggcgtgcgcgccgagttcctcaattccaccctggatgcagaaaacgcccagcgcgtggaa
cgcgccctgctgtccggcgacctggatctgctctacgttgcgccggagcgcctgctgacc
cagcgcttcctttcattgctggaacgtagccgcattgcgctattcgccatcgacgaagcg
cattgcgtctcgcaatggggccacgatttccgcccggaataccgccagctcaccgtactg
catgagcgctggccgcatgtaccgcgcatggcgttgacggccaccgccgacccgccgacc
cagcgcgagatcgcagagcgcctggatctggtagacgcgcgccacttcgtcagttccttc
gaccgccccaacatccgctacacggtggtgcagaaggacaatgcgcgcaaacagctgcag
gaattcctgggccgtcatcgtggctcggccggcatcgtctatgcgatgtcgcggcgcaag
gtggaagaaaccgcgcagcaactgtgcgcgcaaggcttcaatgcactgccctatcacgcc
ggcctgccggcagaggtacgcgcagaaaaccagcgccgcttcctgcgcgaggacggcatc
atcatggccgccacgatcgctttcggcatgggcatcgacaagccggacgtgcgcttcgtg
gcgcacgtggatctgcccaaatcgcttgagggctactaccaggaaaccggacgcgccggc
cgcgacggcgatcccgccgaggcctggctgtgctacggcctgggcgatgtggtgctgctc
aagcagatgatcgagcagggcgaagcggccgaagagcgcaagcgtctggagcgcgccaag
ctcgaccacctgctgggctattgcgaatcgatgcaatgccgtcgccaggtgctgctggcc
ggcttcggcgagacctatcccaaaccctgcggcaactgcgacaactgcctgaccccggcc
gccgcctgggacgccacggtggcctcgcagaaggcgctcagttgcgtctaccgcagcggg
cagcgctttggcgtgggtcatctgatcgacatcctgcgcggtagcgaaaacgagcgtatc
aaacagctggggcacgaccagctcagcacctacggtatcggccgcgatctggacgaacgc
acctggcgcggcgtgtttcgccaactggtggccgccagcctgctggaagtcgatagcgaa
ggtcacggcggcctacgcctcaccgatgccagccgccaggtgctcaagggcgagcgccag
gtcatgatgcgccgcgaaaacccggctgccgggcgcgagcgtagcgcgcagcgcaccggc
ctgccggtgcagccgcaggatctggcgctgttcaatgccttgcgcggcttgcgcgcggat
ctggccaaggaacagaacgtgccggccttcgtgatcttccatgacagcaccttgcgcaac
atcgccgaacaacggccaaccagcatcgatgcgctctcgcgggtgggcggcatcggcggc
ggcaagctggcgcgctacggcgcgcaattgatcgagatcgtgcgcgaacagggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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