KEGG   Xylella fastidiosa subsp. fastidiosa GB514: XFLM_06120
Entry
XFLM_06120        CDS       T01979                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
xff  Xylella fastidiosa subsp. fastidiosa GB514
Pathway
xff03030  DNA replication
xff03430  Mismatch repair
xff03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xff00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    XFLM_06120 (dnaE)
   03430 Mismatch repair
    XFLM_06120 (dnaE)
   03440 Homologous recombination
    XFLM_06120 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xff03032]
    XFLM_06120 (dnaE)
   03400 DNA repair and recombination proteins [BR:xff03400]
    XFLM_06120 (dnaE)
Enzymes [BR:xff01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     XFLM_06120 (dnaE)
DNA replication proteins [BR:xff03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     XFLM_06120 (dnaE)
DNA repair and recombination proteins [BR:xff03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     XFLM_06120 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon HROB tRNA_anti_2
Other DBs
NCBI-ProteinID: ADN63158
Position
complement(1328984..1332565)
AA seq 1193 aa
MSTSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNN
LFALIKFYKAAETVGIKPISGADLLIAEPEHPPWGMTLLCRDHAGYLNLSQLISRGWLEG
HRPEGGVAVHPDWVRDHHKNLFALIGRHSLAGQLLAKGRADLAEQQLADWQHVFGDGLHL
ELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEARVCIASGRMLDDP
KRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVPNDET
LDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIKMGFSGYFLIVADFIQW
GKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMER
RDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSVAKLIPSTLGIT
LKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGGVVIAPNPLT
EFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRHARA
CIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQEQVMQMAQIVGGYSLGSA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLNLKVLRPNINHSAYMFEA
THADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTRVTSAKLNRRALEAMIHA
GALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNADPGTPVIQLDLPECEEWP
LTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERILGSQQRGNGEKRTWQP
EVNTILAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHLLTRDRILIVKGGL
REDEFNGGYSLRIRQCWDYAQLCTDYAQRLLLRVDLRTSHAWERIDAILARYRPGNTPLR
LDLLLNSTHGPVAGTLDLSGGQSVRIEQSLLDKLQKDPAVSKLKVKYTPPWVQ
NT seq 3582 nt   +upstreamnt  +downstreamnt
atgtccacgtcttcatttgttcatctccatattcacactgaattctcgttagcggattca
acgattcgcgtgcccgagaaaccagaacaggctcacccgaaaaaggccaaacaagccaac
ctactcagcagagccgttgaactcggactgccagcgctggcagtaacggatctgaacaac
ctattcgcactgattaagttctataaggccgctgaaaccgtcggcattaagccgatcagc
ggtgctgatctcctcatcgccgaaccagagcaccccccgtggggaatgacattgctgtgt
cgggatcacgctggctacctgaatctatcgcaactgatcagccgcggttggctggaaggt
caccgccctgaaggaggagtggccgtgcacccggactgggtccgtgaccaccacaaaaat
ctatttgccctaatcggacgtcacagcctggccggacagctgttggccaaaggtcgcgct
gatttggccgaacagcaactggcggactggcaacacgtattcggtgacggcttgcacttg
gaactcacgcgcactggacgcgatggcgaagaaccattcaatcaatttgccctccaagtc
gctggcatccgcggcataccggtgattgccagcaacgacgttcgcttcctggtacaaagc
gactttctggcacacgaggcgcgcgtctgtatcgcatctggacgcatgcttgatgatccc
aagcgaccacgcacttacagcgaacaacagtatctgcgttcctccgaagagatggcagca
ctctttgctgacatcccagacgccttggacaacacccgcaccttggcacaacgctgcaat
atcgagatgcggctggggacctatttcttacctaactaccccgttcccaacgacgaaacg
ttggacagttggatccgcaaacagtcgcatgaaggtctggaagcacgcctactgaaacat
ccattagcaccagggcagacacgtgaagactacgtgacccgtctggaatttgaactggac
accatcatcaagatggggttctccggttacttcctcatcgtggccgacttcattcaatgg
ggtaaacaacagggcatccccatcggcccgggacgcgggtctggtgccggctcactggtc
gcgtgggcgttactgattactgacctggaccctctgccatacaacttgttgtttgaacgc
tttcttaatcccgaacgcgtatcaatgccggatttcgacatcgacttttgtatggaacgc
cgtgatgaggtcattagctacgtcgcacgcaaatacggtcgcgaacgggtcagtcaaatc
attacctacggcaccatggctgcgaaagcagtggtgcgcgacgtcggtcgcgtattgggt
ttcccatatggcttggtcgacagcgtcgctaagctgatcccgagcacccttggcatcacc
ctgaaagatgcgatgggcgaaggcgagaccaacgacaacgcctcagcagaactgatacaa
cgctatcaagccgaggaggacgtacaggagctgctcaacctggcacgccaactggaagat
ctgacccgcaatgctggcaagcacgctggcggtgtcgtgatcgcaccgaacccactcact
gaattctgcccactctttgcagaacacgacgaaaacggacgcgggaagaaccccgtcacc
caattcgacaaaaacgacgtggaagaagtcggcttagtgaaattcgacttcctcggccta
cgcacactcaccatcattgattgggcggtcaaggcaatcaacaaacgccacgcccgcgcc
tgtattgatccggtggacatcaccgcacttccactggacgacatcccaacttacaaagac
gtttttgcatcagggaacacgagcgcagtattccaatttgaatcctcgggcatgcgccgc
ctcctcaaagatgcacgcccagaccgcttcgaagatctcatcgcactggtgtcactgtat
cgcccaggccctatggacttgatccctgaattcaccgcgcgcaagcacggagtgcaagag
accatctatcccgacccgcgtacgaagaacattcttaaagacacctacgggatcatggtg
taccaggaacaagtgatgcaaatggcccagattgtcggcggttactcgctgggcagcgct
gacctgctacgtcgcgcgatgggtaaaaaagtacctgccgagatggccaagcaccgcgag
atcttccgcgagggtgccgccaaaggtggcatggacgcggtcaaagccgatgaaatcttc
gacctcatggagaaatttgccggctatggttttaataaatcccacgccgctgcatacgcg
ctggtcagttatcaaaccgcttggctcaagcgccattatcctgctgaattcatggcagcc
acgctgtcctcggacatggacaacaccgacaaagtcgtcggcttcctcgacgaggcacgt
aacctcaatctgaaggtgctgcgaccaaacatcaatcactcagcctacatgttcgaggca
actcacgccgacacaatccaatacggcctgggcgctattaaaggtgtcggccaaagcgtc
tgcgaggcaatcgtcaaagaaaggttgcactacggtccgtatacgtcactgctcgatttc
tgtacccgggtcacctcagccaaactcaaccgacgtgcactcgaagcaatgatccatgct
ggcgcactggacgagctaggtaaaaatcgcgcctctgtcatgctgcaactgccagaagtc
atcaaagcaacggaacaaatgtccagagaacgcgagtccgggcaaaactcgcttttcggc
aacgcagaccccggcacaccagtcatccaattagatcttccagaatgcgaagaatggccg
ctaacacgcatgttgaacggagagcgggagacgctgggcctttatttcagcggccaccca
ttcgacccataccgtaagcaagtgaaggaacttgttggttgcgatctaaacaccagtgcg
cttgaaagaattctgggttcccaacaacgtggcaacggtgaaaagcgtacttggcagcca
gaggtgaacaccattctcgcaggattggtcgtcagtgtgcgccgtaagggagacagccaa
gtctttgtacaacttgaagacggacgcggtcgaattgaatgcagtgcgttctccgacgcc
ctggcagagttcggccacctgttgacccgtgaccgcatactgattgtcaaaggtggtctg
cgagaagatgaattcaacggcggctacagcctacggatccgtcaatgctgggattacgcg
caactctgtacagactatgcgcaacgcttgttgctacgcgtggacctacgcacctctcac
gcatgggaaagaatcgatgccatcctggcacgctatcgccccggcaacaccccattacgt
ctcgatctgttgctgaattcaacccacggccccgtcgccggcacgctcgacttgagtggc
ggccaatctgtacgtatcgaacaatcactcttggataaactgcaaaaagatcccgcggta
tctaagcttaaggtcaaatacacgccaccttgggtgcaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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