KEGG   Xanthomonas hortorum pv. gardneri: BI317_01350
Entry
BI317_01350       CDS       T04668                                 
Name
(GenBank) DNA-formamidopyrimidine glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
xga  Xanthomonas hortorum pv. gardneri
Pathway
xga03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:xga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BI317_01350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xga03400]
    BI317_01350
Enzymes [BR:xga01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     BI317_01350
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     BI317_01350
DNA repair and recombination proteins [BR:xga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     BI317_01350
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: APP83029
Position
310245..311060
AA seq 271 aa
MPELPEVETTLRGLAPHLVDQRIHGVILRRPDLRWPIPEQIEQLLPGATITNVRRRAKYL
LIDTNAGGSALLHLGMSGSLRVLPGDTLPRAHDHVDISLENGRVLRFNDPRRFGCLLWQS
DTQVHELLAALGPEPLSDAFTGDYLHALARGRRAAVKTFLMDQAVVVGVGNIYAAESLHR
AGISPLREAGKVSLDRYRRLATAVKDILGYAIQRGGTTLRDFISPDGAPGYFEQELTVYG
REGETCKQCGRVLKHATIGQRATVWCGSCQR
NT seq 816 nt   +upstreamnt  +downstreamnt
atgcctgagcttcccgaagtcgaaaccaccttgcgcggcctggccccgcatctggttgac
caacggattcatggcgtcatcctgcgacgaccggatctgcgctggcccattcccgagcag
atcgagcagctgcttcctggcgccaccattaccaacgtacgacgtcgcgccaagtatctg
ttgatcgataccaatgctggcggcagtgcgctgctgcatcttggaatgtccggaagtctg
cgcgtgttgcctggcgatacattgccgcgtgcgcacgatcatgtggatatcagtttggaa
aatggacgcgtgctgcgcttcaacgatccgcgccgatttggctgcctgctgtggcaatcc
gatacgcaggttcacgagttgcttgctgcacttggtcccgaaccattatcggatgcattt
actggcgattatctgcatgcactggcgcgtggccgtcgggccgcagtgaaaacctttctg
atggatcaagcggtcgtcgtcggcgtggggaatatctacgctgccgaaagcctgcatcgc
gcgggaatcagccccttgcgagaggctggaaaagtatcgttggaccgctaccggcgcttg
gctacagcagtcaaagacattctgggatatgcgatccagcgcggaggtacgacgttgcgt
gatttcattagcccggacggtgcgcctggttacttcgagcaggaactcacggtgtatggg
cgtgagggtgagacctgcaagcaatgtggacgtgtgttgaaacacgccaccatcggacaa
cgcgcgacggtgtggtgcgggagttgccaacgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system