KEGG   Xenopus laevis (African clawed frog): 100380960
Entry
100380960         CDS       T01010                                 
Symbol
sf3b3.L
Name
(RefSeq) splicing factor 3B subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100380960 (sf3b3.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    100380960 (sf3b3.L)
   03041 Spliceosome [BR:xla03041]
    100380960 (sf3b3.L)
   03036 Chromosome and associated proteins [BR:xla03036]
    100380960 (sf3b3.L)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     100380960 (sf3b3.L)
Spliceosome [BR:xla03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    100380960 (sf3b3.L)
 Complex B
    100380960 (sf3b3.L)
 Complex C
   U2 SnRNP specific factors
    100380960 (sf3b3.L)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     100380960 (sf3b3.L)
    TFTC complex
     100380960 (sf3b3.L)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 100380960
NCBI-ProteinID: XP_018113564
Xenbase: XB-GENE-922001
UniProt: A0A1L8GLL3 A0A974D5I1
Position
4L:69461186..69494628
AA seq 1217 aa
MFLYNITLQRATGISFAIYGNFSGTKLQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIIILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
IAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQDSLSPIMSCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKIIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPEALCIVEMGGAERQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPITGDLSDTRTRYLGSRPVKLFRVKMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNVIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGSPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFTNTG
DDWYVLVGVAKDLILNPRSVAAGLVYTYKLVNNGEKLEFVHKTPVEEVPSAIAPFQGRVL
IGVGKLLRIYDLGKKKLLRKCENKHIPNFIVGIQTIGQRVILSDVQESLIWVRYKRNENQ
LIIFADDTYPRWMTTSCIMDYDTVAGADKFGNICIVRLPSNTNDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETILSVQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPICGRDHLSFRSYYFPIKNVIDGDLCEQFNSMEPAKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgtttctttacaatattaccctacagagggccacaggcataagctttgccatttatggc
aacttttcaggaactaaattgcaggaaattgtagtttcacgtgggaaaattttggagttg
cttcgacctgatgccaacactggtaaagtgcatacacttctgactgtggaggtgtttggt
attatacgctctcttatggctttccgcttgactggtggcacaaaggattatattgtagta
ggcagtgactcagggcgcattatcatcctggagtaccatccttctaagaacatgttcgaa
aagatccaccaggaaacctttggaaagagtggctgtcggaggattgtacctggccagttc
attgcagtggatcccaaaggcagagctgtaatgataagtgcaattgagaaacagaaatta
gtatatattctaaacagagatgcggcagctcgactcacaatctcttcaccactggaggca
cataaggctaacactctagtgtaccatgttgtaggagttgatgttggttttgaaaaccct
atgtttgcctgcctggagatggattatgaggaagctgataatgatccaactggagaagca
gcagccaacacacagcagacactgacattttatgagttggacctgggactgaaccatgtt
gtgcggaagtacagtgagcccttggaagagcatggaaacttcttaattacagttcctgga
ggatcagacgggcccagtggagtgctcatttgttcagaaaactacatcacatataaaaat
tttggagatcagccagatattcgctgtcctattcctaggagacggaatgacctggatgat
ccggaacgtggcatgatatttgtctgctccgccacacacaaaaccaaatccatgtttttt
ttcttggctcaaactgagcaaggagatatcttcaagattacattagaaactgatgaggac
atggtaacagaaatccgcctgaaatattttgacaccgttccagttgcaacagctatgtgt
gtgcttaaaactggctttctctttgtggcttcggagttcggaaaccattacctctaccaa
attgctcacttgggtgatgatgatgatgagccagagttctcctctgctatgccccttgag
gaaggagatacttttttctttcagccacgccctttgaagaaccttgtgcttgttgatgaa
caggacagcctctcccctattatgtcctgccagattgctgacttggccaatgaagacacg
ccccagctatatgttgcttgcggtcgagggccacgatcatctctccgggtcctgaggcat
ggacttgaggtgtctgaaatggctgtctctgagctgcctggtaatcccaatgctgtatgg
actgttaggaggcacatcgaagatgaatatgatgcttatatcattgtgtctttcgtgaat
gccactctggtactctctattggtgaaactgtagaagaagtgacagattctggttttctt
gggactactccaactctctcctgctccctactgggtgatgatgctttggttcaggtgtat
cctgatggcatcagacacatacgtgcagacaaaagagtaaatgagtggaaaacaccaggc
aaaaagatcattgtgaaatgtgctgtaaatcagcgtcaggtagtgattgctctgactgga
ggagagctggtgtactttgagatggatccttctgggcagttaaatgagtacacagaaaga
aaagaaatgtcagctgatgtggtatgcatgagtctggctaacgtaccccctggagaacag
cgctcccgattcttggccgtggggcttgttgataacactgttcgcatcatcagtcttgac
ccttcggactgcctgcagccactcagtatgcaggcattgcccgcacagccagaggccctg
tgtattgtagagatgggtggtgcagagagacaggatgagctgggagaacgtggctctatc
ggtttcctttacctcaacataggccttcagaatggagtgttgcttagaacagtcttagac
ccaattactggtgatctttctgatacccgaactcgatatcttggctctcgacctgtcaaa
ctcttccgagttaaaatgcaggggcaggaggcggtcctggcaatgtcaagtcgctcctgg
ttgagctactcttatcagtcacgcttccacctcaccccactttcatatgagaccctggaa
tatgcctctgggtttgcatctgaacagtgtcctgaaggaattgttgctatttctacaaac
acactgaggatcttggcattggagaaattgggagccgtgtttaaccaggtggctttccca
cttcagtatactccacgcaagtttgtcattcacccagaaagtaacaatgttatcatcatt
gaaacggatcataatgcttatactgaggctacaaaagcccaacgcaaacaacagatggca
gaggaaatggtagaggcagcaggggaggatgaaagagaactggcagcagagatggcagct
gcattcctgaatgagaatctgccagagtccatctttggctctcccaaggctggcaatggc
cagtgggcatcagtcattcgtgtaatgaaccctatccagggaaatactcttgatttggtg
caactggaacaaaatgaggctgctttcagtgtggcagtgtgccgcttcacgaatactgga
gatgactggtatgtcttggtgggggtggctaaagaccttatcctgaatcccagatctgtt
gctgctggattagtatacacttacaaactggtgaataacggagaaaaattggaatttgta
cacaagacacctgttgaggaggtcccttcggcaattgcaccttttcaggggcgggttttg
attggagttgggaagttgttgaggatatatgaccttggaaagaagaagcttctgcgaaaa
tgtgaaaataagcacattcccaactttattgtgggaatacaaactattgggcagcgtgtg
atattgtctgatgtgcaggagagtttaatatgggtgcgttacaagcgcaatgaaaaccag
ctgattatatttgctgatgacacatacccacgctggatgacaacctcctgcatcatggac
tatgacacagtggctggagcagacaagtttggaaatatctgcatagttcgtttaccttct
aataccaatgatgatgttgatgaggatcctactggtaacaaagcattatgggacagaggt
cttctgaatggagcatctcagaaggctgaagtaattgtaaattaccatgtgggagagact
attctttcggtacagaagactacactaatcccaggaggctcggaatccctggtgtacact
accttatcaggaggcatcggtatccttgtaccattcacatcacatgaggatcatgatttc
ttccagcatgtggaaatgcatctacgttcagagcatcctccaatctgtggtagagaccac
ttaagcttccgctcatactacttccctatcaagaatgtgatagatggggatctttgtgaa
cagttcaattcaatggagccagccaaacagaaaagtgttgcagaggaactggaccgaaca
ccacctgaagtttccaaaaagcttgaagacattcgcacccgttatgccttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (57)   
   KEGG ORTHOLOGY (1)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (71)   

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