KEGG   Xenopus laevis (African clawed frog): 108714172
Entry
108714172         CDS       T01010                                 
Symbol
col24a1.L
Name
(RefSeq) collagen alpha-1(XXIV) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xla00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108714172 (col24a1.L)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xla00536]
    108714172 (col24a1.L)
Glycosaminoglycan binding proteins [BR:xla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108714172 (col24a1.L)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_3 Laminin_G_2
Other DBs
NCBI-GeneID: 108714172
NCBI-ProteinID: XP_018113628
Xenbase: XB-GENE-17339206
UniProt: A0A1L8GLN8 A0A974HP57
Position
4L:71294335..71450648
AA seq 1667 aa
MHLGAQRTRSGNISPTARTIKLLFCIAICTTLAISEKQGHGIDILHRLGPGSKDSTSSPM
TPLSATSEYQDLNLTESVVFTKDTVIEYPIDSHFVSLLKKSFTILVSLRSDSVNNAFLFS
IRNRSRLSFGVQLLPKKIVVYTGGKQSVYFDYSVHDGQWQNFAIAIEEKSVSLLADCGKK
YFSKDAVFESQTLVSGSLFTLGRMNLHSIHFEGVICQLEIIPSAAASTNYCKYLKKLCLH
SDTYRSQPTVQTPGLLSSFPHFQPNTNTRNEMQSKISLKSIKELNVPTNVTSVPPVTQNT
FLRGNGTSIVSKTNVANVTDQLTGNNTDKSKSINTSTSHQSQAQEEKTAIATHPVLLPSK
RTDDQDKTEKGNIKHEGERFVEMHPVNRTLYRTTTYDSTDNQLDLWDDTILPEFDNYNTE
NSYEIDMENYDYDYEEFATDHVKGEKGDSGLSGQPGPPGLPGPPGKRGPRGMIGPHGNPG
LPGPPGSKGPKGDPGLSPGQAPSGEKGDPGPPGFIGDRGPLGQMGAKGYPGQPGPPGEKG
IPGMTGSAGALGYPGRQGLAGPEGIMGPKGVRGFIGIPGVPGPPGPEGERGVPGPPGKKG
PKGGQGFPGEFGDRGPPGADGSPGTVGGVGQAGFPGLRGDIGPAGPAGSPGIPGPQGPPG
NMGLPGMKGDKGEPGFSGEPGEPGYPGDKGAVGLPGPPGLKGKVGPLGRIGDQGLQGLPG
PPGPEGFPGDIGMPGLNGPEGPKGVLGERGPPGPQGPKGIEGDEGPVGPQGGLGPRGRPG
RKGYAGEPGLEGLKGEVGNLGNIGKPGELGPAGMPGENGPSGGPGEKGDRGNPGPEGPAG
EKGIEGYPGAPGLGGPIGPSGPPGPPGPRGPPGVQGPKGRRGPQGPEGPTGEQGMEGMKG
EHGEPGKKGLPGQIGKAGHPGDRGEQGKSGPPGTPGSMGDKGPTGEPGQKGPQGETGPPG
ETGLEGPPGTEGEVGPQGEPGVKGELGPPGNVGAQGEPGLRGDPGPPGEEGIQGKDGPKG
EQGDNGPKGENGEKGEEGIPGIQGPSGEPGHVGPQGPEGKPGNPGQRGRPGKKGEKGQMG
PVGEIGSPGDQGLLGELGPKGTRGTRGQLGHLGSMGPEGESGIPGYGGHHGQPGPPGPPG
PKGQKGYPGEDSTVYGPVGPPGEPGSAGEHGDRGEAGDEGYKGHVGVIGPRGSFGQQGSP
GETGITGESGQKGERGVEGPNGKKGARGPPGKPGIPGPPGLVGIRGAAGLPGSDSVIGNP
GKPGLPGKSGLSGEKGSAGLPGIAGYPGARGEKGSNGIAGTSGQPGLKGEQGLQGHPGKS
GVRGFPGSDGDQGPKGEPGLKGFPGEDGDQGLMGFQGFPGPKGPTGDIGVMGIIGPKGPP
GQVGFSGPVGPPGIIGPIGKLGNRGDKGAQGEMGPQGPRGHPGPPGPPGLQGPPKYVDMN
AAIQALINSHAALQIESYQNTEVTILDYSAEIFKTLHYLTNLMHSIKNPPGTRDNPARIC
RDLVNCERKVADGKYWIDPNLGCPSDAIQVFCNFTAGGQTCLSPVTVTELNFGVGKVQMN
FLHLLSTEAVHTLTIHCLNTPVLGTETHGLTPITFKGWNGHMFEGKRLPATNILLDECMV
QDGSWHKTQFQFFTHETNQLPIVEIQTFPQLKATQQNYLENGQLCFL
NT seq 5004 nt   +upstreamnt  +downstreamnt
atgcatttaggagcccaaaggacaaggagtggaaacatctctcccacagcaagaacgata
aaacttctgttttgcattgcaatatgcacaactctagccatttcagaaaaacaaggacat
ggtatagacattctgcacagattaggccctggaagcaaagattcaacttcttccccaatg
acacctctgtcagcaacttcagaatatcaagacttgaacttaacagaatctgttgttttc
acaaaagatacagttattgaatacccaatagacagccattttgtttctttattgaaaaaa
tcatttacaatattagtaagtcttcgttcagatagcgttaataatgccttcctcttcagt
attagaaatagaagtagactcagtttcggagtgcagctccttcccaaaaagatagttgtc
tacacaggagggaagcagtctgtatattttgattacagtgttcatgatggacagtggcaa
aactttgctattgcaattgaagaaaagtcagtatccttgttagctgactgtggaaagaag
tacttcagcaaagatgctgtgttcgaaagccagacgttggtttctggtagtttgtttacg
ttaggaagaatgaatcttcattctattcactttgaaggggtgatatgtcagcttgagata
attccctctgcagcagcttccacaaactactgtaaatatttgaaaaaactgtgtctgcac
tcggatacctaccgatctcagccaacagttcaaacaccaggacttctttcatcgtttcct
cattttcaacctaatacaaataccagaaatgaaatgcagtcaaagattagtttaaaaagc
atcaaagaattaaatgtgccaacaaatgtaacctcagtgcctcctgtgactcaaaatact
tttctacgtggaaatggtacttctattgtaagtaaaacaaatgtagctaatgtcactgat
cagttaactgggaataataccgacaaaagtaagagcataaatacatcaacaagccatcaa
agccaagctcaagaggagaagacagcaattgctacacacccagtgttattacccagcaaa
agaactgatgaccaggacaagaccgagaaaggaaatattaagcacgaaggagaacgtttt
gtggaaatgcaccctgtaaaccggacattatataggactaccacttatgactctacagac
aaccaacttgatttgtgggatgataccattttacccgaatttgataattataatactgaa
aacagttatgaaattgacatggaaaattatgattatgactatgaggaatttgcaacagac
catgtgaaaggcgaaaaaggggattccggactatcaggtcaaccaggtcctccaggtttg
ccaggccccccaggaaagagaggtccaaggggaatgattggacctcatgggaatccaggt
ttacctggtccacctggctccaagggtccaaaaggagatccaggattgtcacctgggcaa
gcaccatcaggagagaagggagatccaggtcctccaggcttcataggagatcgtgggcct
ctaggtcaaatgggtgctaaaggatatccagggcaaccaggtccaccaggagagaaggga
attcctggaatgactggcagtgctggggctcttggttaccctggcaggcagggtttagct
ggaccagaaggtatcatgggccctaaaggtgttagaggttttattggcataccaggggtt
cctggacctcccggacctgaaggagaaagaggtgtaccagggccacctgggaagaaaggg
cccaagggtgggcagggatttccaggagaatttggtgacagaggccctccaggtgcagat
ggaagccctggaactgttggtggtgtcggacaggctggatttcctggacttagaggtgat
attgggccagccggaccagctggatctccagggattcctggtcctcagggtcctcctgga
aacatgggcctgcctggaatgaaaggtgataagggggaaccaggcttttcaggagaacca
ggagagccaggatatccaggagataagggtgcagttggtttaccaggaccaccaggattg
aaaggaaaagtaggacccctgggaagaattggagatcaaggactacagggattacctggt
ccccctggcccagagggttttccaggagacattggaatgccagggttaaatgggcctgaa
gggccaaagggtgtgcttggtgaaagaggacctccaggaccacaaggcccaaagggtata
gagggggacgaagggccagttggacctcaaggtggacttggaccaaggggaagaccaggc
cgtaaaggatatgccggtgaaccaggcttagaaggtttaaagggtgaagttggtaaccta
ggaaatattggaaaacctggagaactagggcctgctggaatgcctggagagaatggacca
tctggaggacctggagaaaaaggagaccgtggaaaccctggccctgaaggccctgctggt
gaaaagggtatagaaggctatccaggagctccaggcttaggtggaccaattggaccttca
ggaccacctggtccacctggtccaagaggacctccaggtgtgcagggcccaaagggtaga
agggggcctcaagggcctgaaggtccaacaggagaacaaggcatggaaggaatgaaggga
gaacatggcgaacctggaaaaaaaggcttacctgggcaaattggaaaagctggtcatcct
ggagacagaggtgaacaaggaaaatcgggtcctccaggcacccctggaagtatgggagac
aagggaccaactggagagccaggacaaaagggaccacaaggtgaaactggaccacctggg
gaaacaggccttgagggtcctcctggaactgagggagaagttggtccacaaggagagcct
ggtgtaaagggagaacttggtcctcctggaaatgttggagcacaaggagagccaggttta
cggggggatcctggacctccaggggaagaaggcattcagggcaaagatggacccaaggga
gagcaaggggataatggtcctaaaggtgaaaatggggaaaaaggagaagaaggaattcca
ggaattcagggtccttctggcgagcctggccacgtgggcccacaagggccagaaggaaag
ccaggaaatcccggtcaaagaggtcgccctggcaaaaagggagaaaagggacaaatggga
ccagttggagaaattggaagccccggagaccaaggtttacttggggaactgggacccaag
ggaacacgaggaacaagaggacaactggggcacttagggtcaatggggccagaaggggag
tctgggattccaggatatgggggacatcatggtcaaccagggcctccaggaccgccaggg
cctaaagggcaaaagggttatccgggtgaagacagtactgtatatgggccagtgggtccc
ccaggtgaaccagggtctgctggagaacatggagacaggggagaagctggagatgaagga
tacaagggtcatgttggagttattgggccaagaggatcatttggacagcaaggatcacca
ggggaaacaggcattactggtgaatccgggcaaaagggagaaagaggtgttgagggtcct
aatggaaagaaaggagcgaggggtcctcctggcaaacctggaattcctggacctccaggg
ctagttggaataaggggtgctgctggacttcctggatcagactctgtcattggaaatcct
ggaaagcctggtttacctggaaaatcaggattgtcgggggaaaagggcagtgctggcctg
cctggaatagctggatatccaggagctcgaggggagaaaggttctaatggtattgcaggt
acctctgggcaaccaggactaaagggtgagcaaggtcttcaaggtcatccaggaaaatca
ggtgtaagaggctttcctggatctgatggtgaccaaggaccaaaaggggagcctggatta
aaagggtttcctggggaagatggtgatcaaggcttaatgggcttccaaggattcccagga
ccaaaaggtcccactggagacattggtgtaatgggcattattggtcctaaaggtccacct
ggccaagtcggattcagtggtcctgtaggtccacctggaataatagggcctattggtaaa
ctgggtaatagaggcgacaaaggtgcacaaggagaaatgggcccccaaggacccagaggc
cacccgggtcctcctggtccaccgggattgcaaggaccaccgaaatatgtggatatgaat
gctgctattcaggccttgattaactcacatgctgccttgcagattgagagttatcagaac
acagaagtaacaatattagattatagtgcagagatttttaaaaccctacactacctgact
aatttaatgcacagtataaagaatccacctgggactcgggataacccagctcgcatctgt
cgtgatctggtcaactgtgaacgcaaagtggctgatggaaaatattggattgatccaaac
ctaggatgcccttcagatgctattcaagttttctgcaatttcactgctggtggacagaca
tgcttgtcacctgtcactgtgacagagttgaattttggtgtggggaaagtccaaatgaat
tttctgcatttgctgagcacagaggcagttcatactctcactattcactgtctgaacacg
cctgtcttgggcactgagacacatgggctaacacctatcaccttcaaaggatggaatggt
cacatgtttgaagggaagagattacctgctacaaatatccttctggacgaatgcatggtg
caagatggcagctggcacaaaacgcagtttcagttttttacgcacgaaaccaaccagctt
ccaattgttgaaatccagacgtttccccaacttaaggcaacacagcagaattacttagaa
aacggtcagctctgcttcctttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (72)   

Download RDF
DBGET integrated database retrieval system