KEGG   Xenopus laevis (African clawed frog): 379334
Entry
379334            CDS       T01010                                 
Symbol
srsf6.S, b52, sfrs6, srp55, srsf6
Name
(RefSeq) serine/arginine-rich splicing factor 6 S homeolog
  KO
K12893  serine/arginine-rich splicing factor 4/5/6
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
xla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    379334 (srsf6.S)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    379334 (srsf6.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    379334 (srsf6.S)
Spliceosome [BR:xla03041]
 Common components
  Common spliceosomal components
   SR proteins
    379334 (srsf6.S)
SSDB
Motif
Pfam: RRM_1 RRM_3
Other DBs
NCBI-GeneID: 379334
NCBI-ProteinID: NP_001079647
Xenbase: XB-GENE-865817
UniProt: Q7ZWX1
Position
9_10S:33851814..33861945
AA seq 667 aa
MPRVYIGRLGYHVREKDLQRFFGGYGKLLEIDLKNGYGFVEFEDSRDADDAVYELNGKDL
CGERVIIEHARGPRRDRDGYGYGSRSGYRNQRTGRDKYGPPVRTEFRLVVENLSSRCSWQ
DLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMKRAVEKLDGTEINGRRIRLVEGKTR
HRRPYSGSHSRSRSRSRRRSRSRSRHPSHSRSRSQSRSPAKKSRSRSLAKSSHSQSPGKS
QSRSRSRSRSKERSSKPKSLHGSQSRSISRGKQDRSRSRSKGLVERSRSRSREDYLRSRS
RSKGMGERSRSWAKVKDDRSHSRSKAKDDRSRSRSKVKDDRSRSRSKAKDDRSRSRSKDD
RSRSQSKAKDDRSRSRSKAKDDRSRSRSKSKDDRSRSRSKAKDDRSRSRSKSKDDRARSR
SKAKDDRSRSRSKAKDDRSRSRSNAKDERSRSRSKDEMSLSRSRENRERSRSPSKSKHDR
SRSQGKHEMSGSRSKSKRDRSGSRSTSKQERSNSRSKSKRERSSSRSKSKRERSSSRSQS
KRERSSSRSKSKRERSSSRSKSKWERSRSRSKSKRERSHSHSKGKRERSRSRSKGKRGNS
EGRPNAKKARSTRSRSGSHSPQQNGKGGARSRSQSPLPASSSKERSLSPLPRAASASSSR
SRSSSRE
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgccgcgagtgtacatcggaagactcggctatcacgtacgagagaaggatctccagcgg
ttcttcgggggctatggcaagctactagagattgatctaaagaacgggtacggctttgtg
gaatttgaggactcgagggatgctgatgatgcagtgtatgagctaaatggcaaagatctg
tgtggtgagcgtgtgattatagaacatgcccggggcccacggcgagaccgagatggatac
ggctatggaagtcgcagtggatacagaaaccagagaactggcagggacaagtatggtccc
cccgtgcgcacagaatttagacttgtcgtggaaaacctctccagtcgatgcagctggcaa
gatctcaaggattttatgaggcaggcgggcgaggtgacatacgctgatgcccataaggag
cgtgccaatgagggggttatagagttcaggtcttactctgatatgaagagagctgtggag
aagttggatggcacagagataaatggacgcagaatccggctagtggaaggaaagactcgt
cacaggaggccttattctggtagccactccagatcacgatctcgtagcaggcgaagatcg
cgcagcaggagtaggcatcctagccacagcaggtccaggagtcaatctcgttcacctgcc
aagaaaagccggtctcgttcccttgcaaagagcagccattcacagtcacctggaaagagc
cagtcccggtctagatcaagatccagaagtaaagaaaggtcaagcaagccaaagtctttg
catggttcacaatcacgtagcatatcccgaggaaaacaggacagatctcgtagtcgctct
aaaggcctggtcgaaaggtcacgcagtagatcaagagaagattatctaaggtctcgcagt
cgctccaaaggcatgggtgaacggtctcgtagttgggccaaagttaaggatgaccgatca
cacagccgatccaaggctaaggatgacagatctcgtagccgatccaaagttaaggatgac
agatctcgcagccgatccaaggctaaggatgaccgatctcgcagcagatccaaggatgac
cggtctcgcagccaatccaaggctaaggatgacagatctcgcagccgttccaaggctaag
gatgacagatctcgcagccgatccaagtccaaggatgacagatctcgcagccgatccaag
gctaaggatgacaggtctcgtagccgatccaagtctaaggatgacagagctcgcagccga
tccaaagctaaggatgacaggtctcgcagccgatccaaagctaaggatgacaggtctcgc
agccgatccaatgctaaggatgaaagatctcgcagtcggtctaaagatgaaatgtcgctc
agtcggtccagagagaacagggaaagatcgcgcagtccatcaaaaagcaagcatgacaga
tctcgtagccaaggcaagcatgagatgtctggcagccggtcgaagagcaagcgtgatagg
tctggtagcaggtcaacaagcaagcaagaaaggtctaacagtcggtcaaaatccaagcgg
gaaaggtcaagtagtcgctcaaaatccaagcgggaaaggtcaagcagtcgctcacaatcc
aagcgggaaaggtcaagtagtcgctcaaaatccaagcgggaaaggtcaagtagtcgctca
aaatccaagtgggaaagatcccgtagtagatcaaagagcaagcgggaaagatcccacagc
cattccaaaggcaaaagagagagatcacgcagtcgttccaaaggcaaaaggggtaattct
gaaggtcgtcccaatgcaaagaaggcaaggtctactcgcagtcgttccggatcccattct
ccacagcagaatggaaagggaggtgcacgatcccgctcccagtctcctcttccagcttct
agtagcaaggagcggtctctcagccctcttcctcgagctgcttctgcttccagttctagg
tctcgctctagttctcgagaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (178)   
   KEGG ORTHOLOGY (1)   
   RefGene (173)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (192)   

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