KEGG   Xenopus laevis (African clawed frog): 379819
Entry
379819            CDS       T01010                                 
Symbol
cetn1.S, cen1, cetn, cetn1, cetn2, xcen
Name
(RefSeq) centrin 1 S homeolog
  KO
K10840  centrin-2
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    379819 (cetn1.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    379819 (cetn1.S)
   03036 Chromosome and associated proteins [BR:xla03036]
    379819 (cetn1.S)
   03400 DNA repair and recombination proteins [BR:xla03400]
    379819 (cetn1.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     379819 (cetn1.S)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Centrosome formation proteins
   Centriole proteins
    379819 (cetn1.S)
   Centrosome duplication proteins
    Centriole replication proteins
     379819 (cetn1.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      379819 (cetn1.S)
SSDB
Motif
Pfam: EF-hand_7 EF-hand_1 EF-hand_6 EF-hand_8 EF-hand_9 AIF-1 EF-hand_5 EF-hand_4 EF-hand_14 Dockerin_1 SurA_N_3 SUB1_ProdP9 Nop5_N LETM1_RBD RTP Maestro_HEAT DUF6707 DUF5580_M SRI
Other DBs
NCBI-GeneID: 379819
NCBI-ProteinID: NP_001080127
Xenbase: XB-GENE-967622
UniProt: Q7SYA4 A0A974H5W8
Position
8S:74403103..74412852
AA seq 172 aa
MASNYKKPSLGVTTQRKKPVPKTELTEEQKQEIREAFDLFDTDGTGTIDVKELKVAMRAL
GFEPKKEEIKKMIADIDKEGTGKIAFSDFMSAMTQKMAEKDSKEEIMKAFKLFDDDETGK
ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIMKKTSLY
NT seq 519 nt   +upstreamnt  +downstreamnt
atggcttctaactacaagaaaccatctttaggagtgacaactcagagaaagaaacctgtc
ccaaaaactgagctcacagaagaacagaaacaagaaattcgggaagcttttgatcttttt
gatacagatggaactgggaccatagatgttaaggagctaaaggtcgccatgcgagcattg
ggatttgagccaaaaaaggaagaaatcaagaaaatgattgctgatattgataaagaaggc
actggaaaaatagctttcagtgattttatgtctgcaatgacacagaaaatggctgaaaag
gattccaaagaagagataatgaaggcattcaagttatttgatgatgatgaaacaggaaag
atatcattcaagaacctgaaacgggtggctaaggagcttggtgaaaaccttacagatgaa
gaattgcaggaaatgattgatgaagctgaccgagatggagatggcgaagtcaatgaacaa
gaatttcttagaataatgaagaagaccagtttatactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (19)   
   Pfam (19)   
All databases (64)   

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