KEGG   Xenopus laevis (African clawed frog): 380419
Entry
380419            CDS       T01010                                 
Symbol
col1a2.L, col1a2
Name
(RefSeq) collagen type I alpha 2 L homeolog precursor
  KO
K06236  collagen type I alpha
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04510  Focal adhesion
xla04512  ECM-receptor interaction
xla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    380419 (col1a2.L)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    380419 (col1a2.L)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    380419 (col1a2.L)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xla00536]
    380419 (col1a2.L)
Glycosaminoglycan binding proteins [BR:xla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   380419 (col1a2.L)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 380419
NCBI-ProteinID: NP_001080727
Xenbase: XB-GENE-493268
UniProt: Q801M5
Position
6L:32779143..32817005
AA seq 1346 aa
MLSFVDMRTVLLLAVTLYLATCQSVNEVQRGPAGPPGRDGIDGEPGLPGPPGPPGLGGNF
AAQYDSSKSGGEPGPAGLMGPRGPPGAPGSPGAQGFQGHAGEPGEPGQPGPVGSKGPTGP
PGKSGEDGHPGKSGRPGERGTVGTQGARGFPGTPGLPGFKGIRGHNGLDGQKGAPGVAGV
KGETGANGENGSPGQAGARGLPGERGRGGPPGPAGSRGSDGSGGPTGPAGPIGSAGAPGL
PGAPGAKGEIGSAGNSGPTGAAGPRGEPGPPGSLGPVGPAGNPGANGVNGAKGAAGLPGV
AGAPGLPGARGIPGPPGPSGPAGARGLSGDPGVSGGKGDTGAKGEPGSSGPSGPAGPSGE
EGKRGPNGEAGSSGPAGNAGIRGVPGTRGLPGPDGRAGGMGAPGSRGASGPPGTRGPNGD
AGRPGEPGLLGARGLPGLSGSPGPAGKEGLAGPQGIEGRSGPAGPSGPRGEPGSIGFPGP
KGPSGEPGKNGDKGNQGPAGNRGAPGPDGNNGAQGPPGIVGNNGDKGEQGPAGAPGFQGL
PGPGGAAGELGKPGERGAPGDFGPAGPAGTRGERGTPGESGAAGPFGPLGPRGPTGAPGT
DGAKGEPGVAGLNGALGPAGPGGIPGERGAAGVPGSKGEKGDAGHAGEYGNQGRDGSRGP
AGASGAPGPAGAAGDRGESGPAGPAGIAGPRGTPGERGEAGPAGTTGFAGPPGAAGHTGV
KGERGPKGPKGEGGSPGALGAVGSHGPAGPNGPAGTTGPRGDGGAPGATGFPGPAGRTGA
PGPAGTVGPSGPTGHPGKDGPRGTRGDSGPVGRPGEQGIGGPQGLSGEKGPSGESGPAGA
PGASGPSGVLGSLGFSGLPGSRGERGTPGGSGSNGEPGPSGPPGAAGARGPSGPMGSPGP
NGVPGEAGRDGNPGNDGPSGRDGLPGNKGERGYPGNSGPAGSLGASGAPGAVGPAGKSGN
RGEPGPVGPAGVVGPAGPRGPAGIQGGRGDKGEAGEKGARGLDGRKGHNGLQGLPGPAGS
PGETGPAGTNGPSGPRGPAGPSGPPGKEGRSGHSGTIGPVGLRGPAGHQGPAGPPGPPGL
PGLPGSSGGGYDGGFGGEFFRADQPSRRPKDYEVDATLKSLNSQIETIMTPEGSKKNPAR
TCRDLRLSHPDWSSGFYWIDPNQGCTSDAIRVFCDFSTGETCIHANPESISQKNWYTSKT
TDRKHVWFGETINGGTQFEYNDEGITSKDMATQFAFMRLLANHASQNITYHCKNSIAYMD
GQTGNLKKAILLQGSNDVELRAEGNSRFTFSVLEDSCTQHTGEWGRTVIEYRTNKPSRLP
ILDIAPLDIGGDDQEFGLDIGPVCFK
NT seq 4041 nt   +upstreamnt  +downstreamnt
atgctcagctttgtggatatgcggactgtgctgctactcgcagtcaccctatacctagca
acatgccaatctgtaaatgaggttcagaggggaccagcaggtcctccaggtagagacggc
attgatggagaaccaggcttacccggaccccccggcccccccggccttggcggaaacttt
gctgctcagtatgactcatccaaatctggcggagaacctggccctgctggtttaatggga
ccaagaggaccccctggagcacccggatcccctggtgctcaaggcttccaaggacatgcc
ggtgaacctggtgaacctggccaacctggtcctgtaggatctaaaggtccaactggtccc
cctggaaaatccggtgaagatggtcaccctggcaaatctggaagacccggtgagagagga
actgttggaactcaaggtgcacgtggttttcctggaactcctggtctccctggatttaaa
ggaattaggggtcacaatggtctggatggtcagaagggagccccaggtgttgcaggtgtc
aagggagaaactggtgctaatggtgaaaacggatcccccggtcaggctggtgcacgtggt
ctcccaggtgaaagagggcgtggtggacctcctggcccagctggttcccgtggaagcgat
ggcagtggaggccccaccggcccagctggtcctattggttctgccggagctcccggtctt
cctggtgctcctggtgcaaagggtgaaattggatctgcaggaaacagtggtcccactggt
gctgctggtcctagaggtgaaccaggtccacctggttctcttgggcctgttggacctgct
ggtaaccctggtgctaatggagtcaacggtgctaaaggtgcagctggtctccctggtgta
gctggtgctcctggtttgcctggtgcacgtggaatccccggtcccccaggaccttctggt
ccagctggagctagaggactttctggtgatcctggtgtttctggtggaaaaggagacact
ggtgccaagggcgaacctggttcttctggtccctctggtcctgctggtccatctggagaa
gaaggcaagagaggtcccaacggagaagctggatcatctgggcctgctggcaatgctgga
attagaggtgttcctggaactcgtggtctgccaggccctgacggtagagctggtggaatg
ggtgctcctggtagccgtggtgcttctggtcctcctggtacaagaggtccaaatggtgat
gctggacgccctggagagcctggtcttcttggtgcaagagggcttcctggtttatctggc
agccctggtcctgctggcaaggaaggtcttgctggtcctcaaggtattgagggtcgtagt
ggtcctgctggtccatctggcccaagaggtgaacctggtagcattggattccctggtccc
aaaggtccatctggtgagcctggaaagaatggagataagggaaaccaaggtcctgctgga
aacagaggagcccctggacccgatggtaacaatggagctcaaggacccccaggaattgtt
ggcaataatggagacaaaggtgaacaaggtcctgctggtgccccaggcttccagggtctt
ccaggccccggtggtgctgctggagaacttggcaaacccggagaaagaggtgctcctggt
gactttggtcctgctggcccagctggcacaagaggtgaacgtggtactcctggagagagt
ggtgctgcaggtccatttggacctcttggaccccgaggcccaactggtgcacctggaact
gatggagccaagggtgaacccggtgtagctggattaaatggtgctcttggaccagctggc
cctggtggaatcccaggagagagaggtgcagctggtgttcctggatcaaagggagagaag
ggtgacgctggccatgctggagaatatggtaaccaaggaagagatggttctcgtggtcct
gctggtgcttccggtgctcctggtcctgctggtgctgctggtgatcggggtgaatctggc
cctgctggacctgctggtattgccggtcctcgtggaactcctggtgaacgtggtgaggct
ggtccagctggtactactggttttgctggtcctcctggtgcagctggtcacactggtgtc
aagggagaaagaggaccaaaaggaccaaagggtgaaggtggttctcctggcgctcttggt
gcagttggctctcacggacctgcaggtcccaatggtccagctggcactactggtccccga
ggtgatggtggtgctcctggtgcaactggtttccctggtcctgctggaagaactggtgct
cctggccctgctggtactgttggtccttctggccctacaggccaccctggcaaagatggt
ccaagaggtactcgtggtgacagcggaccagttggccgccctggagaacaaggtatcggt
ggtccacaaggtttgagtggagagaagggtccatctggtgaatctggtcctgctggtgct
cctggcgcttctggtccttctggtgtccttggttctcttggtttctctggtcttccagga
tcaagaggtgaacgtggtacccctggtggctctggatctaatggtgagccaggtccttct
ggtcctccaggtgctgctggtgctcgtggtccctctggccccatgggctctcccggtcca
aatggtgttcctggtgaagctggccgtgatggcaatcctggtaatgatggtccatctggt
cgtgatggtctgcctggaaataagggagagcgtggctatcctggaaacagtggccctgct
ggatctcttggtgcttctggagctccaggagctgttggccctgctggaaaatcaggaaac
cgtggggaacctggtcctgttggtcctgctggagttgttggtcctgctggtcccagaggc
ccagctggaattcaaggtggtcgtggtgacaagggtgaagctggtgagaagggagctaga
ggtttggatggacgcaaaggacataatggtttacaaggtctccctggtcctgctggttct
ccaggagaaacaggtcctgctggtaccaatggtccatctggcccacggggtccagctggc
ccatccggccctccaggcaaagaaggacgttctggacacagtggtactatcggtccagtt
ggtcttcgtggtcctgctggtcaccaaggtcctgctggtcctcctggaccacctggtctt
cctggtcttcctggctcatctggtggtggatatgatggtggctttggtggtgaattcttc
agagctgaccagccttctcgcagaccaaaggattatgaagtggatgccactctgaaatct
ttgaacagccaaatcgagacaatcatgaccccagaaggctcaaagaagaaccctgcccgc
acttgccgtgacttaagactcagccacccagactggagcagtggattctactggattgac
cctaaccaaggctgcacatctgatgccatcagagtattctgtgatttctccactggtgag
acctgcatccatgccaacccagagagcatttcacagaagaactggtacactagcaagacc
acggacaggaagcatgtatggtttggtgaaaccatcaatggtggcacacagtttgaatac
aatgacgaaggaatcacttccaaggacatggccactcagtttgctttcatgcgtttgttg
gctaatcacgcatctcagaatattacctaccactgcaagaacagcattgcctatatggat
ggacagactggaaacctgaagaaggccatcttgctacaaggatccaatgatgttgaacta
cgcgcagagggcaacagcagattcacttttagcgtccttgaagatagttgcacgcaacac
acaggtgaatggggaagaacagtcatagaatacagaacaaacaagccatctcgcttaccc
atccttgacattgcacctttggacattggtggtgatgaccaagagtttggtttggacatt
ggcccagtgtgtttcaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (101)   
   KEGG ORTHOLOGY (1)   
   RefGene (96)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (118)   

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