KEGG   Xenopus laevis (African clawed frog): 380515
Entry
380515            CDS       T01010                                 
Symbol
col1a1.S, col1a1
Name
(RefSeq) collagen, type I, alpha 1 S homeolog precursor
  KO
K06236  collagen type I alpha
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04510  Focal adhesion
xla04512  ECM-receptor interaction
xla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    380515 (col1a1.S)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    380515 (col1a1.S)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    380515 (col1a1.S)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xla00536]
    380515 (col1a1.S)
Glycosaminoglycan binding proteins [BR:xla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   380515 (col1a1.S)
SSDB
Motif
Pfam: Collagen COLFI VWC TILa SNARE
Other DBs
NCBI-GeneID: 380515
NCBI-ProteinID: NP_001080821
Xenbase: XB-GENE-6253424
UniProt: Q802B5
Position
9_10S:complement(5031057..5056228)
AA seq 1449 aa
MFSFVDTRTLLLIAATILVARCQGEHDVQTSDCVQHGITYSNRDVWKPEDCQICVCDNGN
ILCDEVMCEDADCPNPVIVPGECCPVCTDNDAQYSEVTGVEGPKGDVGPKGDKGIAGPPG
RDGIPGQPGIPGPPGPPGPPGLGGNFAPQMSYGYDEKSAGISMPGPMGPMGPRGPPGPSG
SPGPQGFQGPPGEPGEPGASGAMGPRGSSGPPGKNGEDGEAGKPGRPGERGPPGPQGARG
LPGTAGLPGMKGHRGFNGLDGAKGDSGPAGPKGEPGSPGENGAPGQVGPRGLSGERGRPG
PSGPAGARGNDGAPGAAGPPGSTGPSGPPGFPGGVGPKGDAGPQGSRGSDGPQGGRGEPG
APGQAGAAGPSGNPGSDGQPGAKGATGAPGIAGAPGFPGARGAPGAQGPGGSPGPKGNNG
EPGAQGNKGEAGAKGEPGPAGVQGPPGPSGEEGKRGSRGEPGPAGPPGPAGERGGPGSRG
FPGSDGASGPKGAPGERGPVGPAGPKGSSGESGRPGEPGLPGAKGLTGSPGSPGSDGKTG
PAGAPGQDGRAGPPGPPGARGQSGVMGFPGPKGAAGEPGKNGEKGVAGPPGAVGLPGKDG
DAGAQGPPGPAGPAGERGEQGPAGGPGFQGLPGPPGPAGESGKPGEQGVPGDVGPSGPAG
ARGERGFPGERGAQGPPGPQGARGSNGAPGNDGAKGEAGAAGAPGGQGPPGLQGMPGERG
SSGLPGAKGDRGDQGVKGSDGTPGKDGVRGLTGPIGPPGPGGAPGDKGEAGPAGPAGPTG
ARGAPGERGESGPPGPAGFAGPPGADGQPGAKGEQGDSGAKGDAGPPGPAGPTGAPGPAG
ALGSPGPKGARGAPGPPGATGFPGAAGRLGPPGPSGNAGPPGPSGPAGKEGAKGPRGETG
PAGRSGEPGAAGPPGPPGEKGSPGSDGPAGAPGIPGPQGVAGSRGTVGLPGMRGERGFSG
LPGPAGEPGKQGPSGPSGERGPPGPSGPPGLGGPPGESGREGAPGSEGAPGRDGAVGPKG
DRGEGGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPSGPAGPAGTAGARGPAGPQGPRG
DKGEAGEQGERGMKGHRGFNGPSGPPGPPGSSGEQGPSGASGPAGPRGPPGSSGNPGKDG
SNGLPGPIGPPGPRGRTGDVGPAGPPGPPGPPGPPGQSGGGFDFSFMPQPPQEKSHDGRF
YRADDANVMRDRDLEVDSTLKSLSKQIENIRSPEGTRKNPARTCRDLKMCHSDWKSGEYW
IDPNQGCILDAIKVYCNMETGETCIYPTQSSIPQKSWYTSKNLREKKHVWFGEAMSDGFQ
FEYGSEGSNSADVTIQLTFLRLMATEASQNITYHCKNSVAYMDQATGNLKKALLLQGSNE
IEIRAEGNSRFTYSVVEDGCTQHTGEWGKTVIDYKTTKTSRLPITDVAPMDIGAPDQEFG
IDIGPVCFV
NT seq 4350 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatacacggaccctgctgcttatagcagcaacaatcctagtagca
agatgtcaaggagaacatgacgttcaaacttccgactgcgtccagcacggtatcacttat
agcaacagagatgtatggaaacccgaagactgccagatctgtgtgtgcgacaatggaaac
atcctttgtgatgaagtgatgtgcgaagatgccgactgccccaaccctgtgattgtacct
ggcgaatgctgccccgtctgcactgacaacgatgcccagtattccgaagtgactggagta
gagggccccaagggagatgttggtcccaagggagacaaaggcattgctggtccacctggc
agagatggcattcctggacaacctggaattcctggacctccaggcccacctggtccacct
ggccttggcggaaactttgctcctcaaatgtcttatggttatgatgagaaatctgctggt
atttccatgcccggtcccatgggcccaatgggtccccgtggtcctcctggcccatctgga
tcacctggaccccaaggtttccaaggaccccctggtgaacccggtgaacccggtgcttct
ggtgcaatgggacctcgtggatcatcaggacctcccggaaagaacggtgaagatggtgaa
gctggcaaaccaggccgccccggtgagcgtggacccccaggaccccagggtgcccgtggt
cttccaggaactgctggtcttccaggcatgaagggccacagaggtttcaatggtcttgat
ggtgcaaagggtgactctggtcctgctggacccaagggtgagcctggttcccctggtgag
aatggtgctcccggacaagtgggtccccgtggtctctctggtgagagaggtcgccctggt
ccatctggccccgctggtgcccgtggtaacgatggtgctcctggcgctgctggtccccct
ggttccaccggcccatctggaccccctggcttcccaggaggtgttggtcccaagggtgat
gctggtccccaaggatctcgtggttctgatggtccccaaggtggtcgtggtgaacctggt
gcccctggtcaagctggtgctgctggtccttctggaaaccctggtagtgatggtcaacct
ggtgctaagggtgccactggtgctcctggtattgctggtgctcctggcttcccaggtgct
cgtggtgctcctggagctcaaggccctggaggttctcctggccccaagggtaacaatggt
gaacctggtgctcaaggaaacaagggtgaggctggtgcaaagggagaacccggccctgct
ggtgttcaaggccccccaggtccttctggtgaagaaggaaagagaggatcccgtggcgag
cccggacctgctggacctcccggacctgctggtgaacgtggtggccctggaagccgtggt
ttccctggatctgatggtgcctctggacctaagggtgctcctggtgaacgtggtcctgtt
ggccccgctggtcctaaaggatcttctggtgaatctggccgccctggtgagcctggtctt
cccggtgctaagggtctcactggtagccctggcagccctggttctgatggcaaaaccgga
cctgctggtgcccctggtcaagatggccgcgctggaccccctggaccaccaggtgcaaga
ggccaatctggagtaatgggattccctggacctaaaggtgctgctggtgaacctggaaag
aatggcgagaaaggtgttgctggtccccctggtgctgttggtcttcctggcaaagatggt
gatgctggcgctcaaggtccccctggccctgctggtccagctggtgagagaggtgaacaa
ggtcctgctggtggtcctggcttccaaggtcttcctggtcccccaggccctgctggagag
agtggcaaacccggtgaacagggtgttcctggtgacgtcggtccttctggtcctgctggt
gcaagaggtgaaagaggtttccctggtgaacgtggtgctcaaggtccccctggtcctcag
ggagcacgtggttctaatggtgctcctggtaacgatggtgctaagggtgaagctggtgct
gctggtgcccctggtggtcaaggacctcccggtcttcagggaatgcccggcgaacgtggt
tcttctggacttcctggtgcaaagggtgacagaggtgaccaaggagttaaaggcagtgat
ggtacacctggcaaagatggtgtcagaggtttgactggtccaattggtccacctggtcca
ggtggtgctcctggtgacaagggtgaagctggtcctgctggtcctgctggcccaactggt
gcccgtggtgctcccggtgagcgtggtgagagcggcccccctggccctgctggatttgct
ggtccccctggtgctgatggacaacctggagctaagggagaacaaggagattctggtgct
aagggtgatgctggtcctccaggccctgctggccccactggtgctcctggacctgctggt
gctcttggatctccaggtcccaaaggtgctcgtggtgctcctggaccccctggtgcaact
ggtttccccggtgctgctggaagacttggaccccctggcccatctggcaatgctggacct
cctggcccatctggccctgctggaaaggaaggcgcaaagggacctcgtggtgagactggc
ccagctggacgttctggtgaacctggtgctgctggacccccaggacctcctggcgagaaa
ggttcccctggtagtgatggccctgctggtgccccaggtattcctggacctcaaggtgtt
gctggatctcgtggtactgttggtcttccaggaatgagaggagaaagaggcttctctggt
cttcctggaccagctggtgaacctggcaaacaaggtccctctggccccagcggtgaacgt
ggtccacctggtccttctggcccaccaggcttgggtggacctcccggtgaatcaggtcgt
gagggtgctcctggtagtgaaggtgctcctggtcgtgatggtgctgttggacccaagggt
gaccgtggtgagggtggacctgctggtccccctggtgctcctggtgcccctggtgctcct
ggcccagttggtcctgctggaaagagtggagatcgtggtgagactggtccttctggccct
gctggtcccgctggtaccgctggtgctcgtggtcccgctggtcctcaaggcccacgtggt
gacaagggtgaagctggagaacaaggtgagagaggcatgaagggacatagaggattcaac
ggaccctctggaccacccggcccccctggctcctctggtgaacaaggtccatctggtgct
tctggtcctgctggtccaagaggtccccctggatcttctggcaatcctggtaaagatggt
tctaatggtctgccaggacctattggtccccctggtccacgtggtcgtactggtgatgtt
ggtcctgctggtccccctggacctcctggtcctcctggtcctcctggccaatcaggtggt
ggattcgacttcagcttcatgcctcagccacctcaggagaaatctcatgatggccgcttc
taccgtgctgatgatgccaatgtaatgcgcgaccgtgacctggaagttgactccaccctc
aagagtctgagcaaacagatcgaaaacatccgcagcccagagggtaccagaaagaaccca
gcccgcacctgccgtgacctgaagatgtgccattctgactggaagagtggtgaatactgg
atcgatcccaaccaaggctgcatccttgatgccatcaaggtctattgtaacatggagact
ggagagacctgcatctacccaacccagagcagcattccacagaagagctggtacactagc
aagaacctacgtgagaagaagcatgtctggttcggcgaggcaatgagtgatggattccag
tttgaatatggcagtgaaggatctaactcagctgatgttaccatccaacttaccttcctg
cgtctcatggccactgaagcctctcagaacatcacttaccactgcaagaacagcgttgct
tacatggaccaagctaccggcaacctgaagaaggccctgctcctgcaaggctccaatgaa
atcgagatcagagcagagggcaacagccgattcacatacagtgttgtagaggatggctgc
acgcaacacacaggagaatggggcaagacagtaattgactacaagacaacaaagacatca
cgcctgcccattaccgatgtggcacccatggatattggagccccagatcaggaattcgga
attgacatcggaccagtctgcttcgtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (109)   
   KEGG ORTHOLOGY (1)   
   RefGene (104)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (127)   

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