KEGG   Xenopus laevis (African clawed frog): 398799
Entry
398799            CDS       T01010                                 
Symbol
nup54.S, nup54
Name
(RefSeq) nucleoporin 54kDa S homeolog
  KO
K14308  nuclear pore complex protein Nup54
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    398799 (nup54.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    398799 (nup54.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     398799 (nup54.S)
SSDB
Motif
Pfam: Nup54 Nup54_C DUF892 UPF0228
Other DBs
NCBI-GeneID: 398799
NCBI-ProteinID: NP_001083202
Xenbase: XB-GENE-948042
UniProt: Q6PAY1
Position
1S:complement(70758735..70784756)
AA seq 502 aa
MAFNFGATTGTPANQGGFGGFGATTTASTGPAFSFTTPANTTSGLFGATQNKGFGFGTGF
GSTTTSTGLGTGLGTGLGFTGFNTSQQQQQQSVLGAGLFNQSFQSTPQSNQLINTASALS
APTLLGDERDAILAKWNQLQAFWGTGKGFFMNNTPPVEFTQENPFCRFKAVGFSYIPNNK
DEDGMISLIFNKKESDIRGQQQQLVESLHKVLGGHQTLTVNVEGVKTKADNQTEVIIYVV
ERSPNGTSRRVGASALFSYFEQAHIKANMQQLGVTGAMAQTELSPVQIKQLIQNPLSGVD
PIIWEQAKVDNPDPERLIPVPMIGFKELLRRLEVQDQMTKQHQSRLDIISEDIGELQKNQ
TTTMAKIGQYKRKLMELSHRVLQVLIKQEIQRKSGFAIQAEEEQLRVQLDTIQSELNAPT
QFKGRLNELMSQIRMQNHFGAVRSEEKYYVDADLLREIKQHLKQQQEGVSHLISIIKDNH
EDIKLIEQGLNDNLHMRTGFLS
NT seq 1509 nt   +upstreamnt  +downstreamnt
atggcattcaattttggagctaccaccgggactccggccaatcaaggtggatttggaggc
tttggagctactacaactgcatctactgggccagcttttagttttactactccagcaaac
acaacctcaggtctctttggtgctacacaaaataagggatttggctttggaactggtttt
gggtcaactacaacaagcacaggtctaggtactggtcttggaacaggtttgggtttcacc
ggattcaatacatcccagcagcagcaacagcagtcagtgcttggagctggtcttttcaac
caatcttttcaaagcaccccccagtcgaaccaactcataaacactgctagtgctctttct
gcaccgactttacttggggatgagcgagatgcaatcttggcaaagtggaaccaacttcag
gccttttggggaacaggcaaaggcttttttatgaataacacacctcctgtggaattcacc
caggaaaacccattttgtaggtttaaggctgttggtttcagctacatccctaacaacaag
gatgaagatggtatgatatctcttatcttcaacaaaaaagaatccgacatccgagggcag
caacagcagctagtggaatctctgcacaaagtccttgggggacaccagacattgactgta
aatgtggaaggggttaaaactaaagcagataaccaaacagaagtcataatctatgttgta
gagcggtctcctaatggaacttcaaggcgagtcggagccagcgctcttttcagttacttt
gaacaagcacacatcaaggctaatatgcagcagctcggggttacaggggcaatggcccaa
acagaactttctccagtacagattaagcaactcatccagaaccctctttcaggtgttgat
ccaataatctgggaacaagccaaagtggacaatccagatcctgaaaggcttatccctgtt
cctatgattggttttaaagagctgctaagaagacttgaagtccaagatcagatgacaaag
caacaccaaagcagacttgatattatttcagaagatattggtgaacttcagaaaaaccaa
actacaacaatggctaaaattggccaatacaaaaggaaactaatggaactttctcacaga
gtacttcaggttttaataaaacaagaaatacaaaggaagagtggatttgctattcaagca
gaagaagagcaattacgtgtacagcttgatacaatccagagtgaacttaatgcacccact
cagtttaagggtagactcaatgaactgatgtcacaaataagaatgcagaatcattttgga
gctgtacggtctgaagaaaaatattatgttgatgcagatcttttgagagagatcaaacag
catctaaaacaacagcaagaaggtgtgagccatttgatcagcattatcaaagacaaccat
gaggatataaaactaattgaacaaggactaaatgataatcttcacatgagaactggattc
ttaagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

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