KEGG   Xenopus laevis (African clawed frog): 431999
Entry
431999            CDS       T01010                                 
Symbol
ttf2.S, lodestar, ttf2
Name
(RefSeq) transcription termination factor, RNA polymerase II S homeolog
  KO
K15173  transcription termination factor 2 [EC:5.6.2.-]
Organism
xla  Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:xla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    431999 (ttf2.S)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     431999 (ttf2.S)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII zf-GRF DEAD fn2
Other DBs
NCBI-GeneID: 431999
NCBI-ProteinID: NP_001084942
Xenbase: XB-GENE-5761943
UniProt: Q6NRX8
Position
2S:complement(29400799..29411111)
AA seq 1187 aa
MEKVRCKEHGTLCLLKTGTRDGPNRGKSFYVCTSNPSAPCLFTQSAELPASHCLLHEDFL
VELQAIVKQESGPYRLYYRCVKSKSDGKKWCGYIPWQDPKQKTVPNCKLPQHSMEKPERN
PFKVINEDPKIGVWKRLNEEPKAKAEITKKSDQDTKAGAHGEIVHDNRRQGSEKITQERK
ASGEERRPVLQGGPNSRQKLSADTSKPSGEEESHSASEAQLSKSIRHVTGEPKKCVEAQK
EERSLQQGWRDRELPGGMKVKKFQQEFAPESDGKAAETPRECELDTRKSSASVSRGPLLA
KEGKASDSGRVMAATDQRDSKTQTTDTTRDSRTGSQVRTEGAQLTENHTTGALILQPELS
NDAPVPDNQEEDGDDVVFVSSLPANEKAPSMRTSGVGKQRTITSFPGFSQPQQSQSSAAL
HSQLSAQLQQKKATMAAVNLQALPDRGVRLLKQVQDLEDALSSLSLSPETSEEKESSQSE
MIPPRSAPANPFSKPGPVELARGVKPLSFHELPPMSLGLNGSAPVPSLSQNFSSLYKVNP
EWQTLYGGRMTEERLFAVRNATSEAIEHLHKSLESCPSPENTVEDPAGLKVPLLLHQKQA
LAWLRWRENQTPRGGILADDMGLGKTLTMVALILMQKQRQNREQEKKLEEWISKTDSTLV
VTRGTLIVCPASLVHHWKKEVEKRVAGSRLKVYLYHGPSRERDCSVLADYDIVVTTYSLV
SKEIPVKKEEGDAPAKDQDLEDKASSSSPLLRMAWARIILDEAHNIKNPKVQTSIAVCKL
RAGARWAVTGTPIQNNLLDMYSLLRFLRCSPFDEFKLWKNQVDNGSRKGGERLNILTKSL
LLRRTKDQMDHLGRPLVLLPQRRSELHKLTLSDKEKAVYDVIFARSRSTLQNYLKRHEGG
THIRTQNTDNPFERVANEFGSSQSEVSALPASQGSSTVHILSLLLRLRQCCGHLSLLKVV
LEQLELKSEGLSLTLEEQLSALSLTECQGPDPKSTVSLNGTNFPSELFDTESQSTKISSL
VSELKTIRSSSEAQKSVIVSQWTSMLKIVAVHLKLIGLSCATIDGSVNPKQRMDMVEDFN
NNPKGPQVMLVSLCAGGVGLNLVGGNHLFLMDMHWNPALEDQACDRIYRVGQQKDVVIHR
FVCLGTVEEKISQLQEKKKDLAKKVLSGNSATFTKLTLADLRLLFGV
NT seq 3564 nt   +upstreamnt  +downstreamnt
atggagaaagtgcgctgcaaggagcatgggactctatgtctgctgaaaactggcactcgc
gatggacccaacagagggaagagtttctatgtctgcactagtaatcccagtgccccctgc
ctattcacccaatctgctgaacttcccgcctctcactgcctcttacatgaagatttcctg
gtggagctgcaggcaattgtgaaacaagagtctgggccttacaggttgtactatcgctgt
gtgaagagtaagagtgatgggaagaagtggtgcggatacatcccttggcaggatccaaaa
cagaagactgttccgaactgtaagctgccccagcattccatggaaaagccagagagaaat
ccctttaaagtcatcaatgaagatcccaaaattggtgtgtggaaacggctcaacgaggag
ccaaaggccaaagcagagatcactaagaagagtgaccaggacacaaaagccggggcccat
ggtgagattgttcatgataataggagacaagggagcgagaagataacacaagagagaaaa
gcctctggggaggaaaggagacctgttttacagggtggtcccaactccaggcagaagctt
tctgcagatacgagcaagccttctggggaggaggagagccattctgccagtgaggcgcag
ctttcgaagagcatccgtcatgtaactggagagccaaagaagtgtgtggaagcccaaaag
gaggagaggagtctacagcagggatggagggacagggagttaccaggtggaatgaaagtg
aaaaagtttcagcaagaatttgcaccagagagtgatgggaaggctgcagagacaccacgg
gaatgtgagttagataccaggaaaagcagcgcgtcagtctcaaggggaccgttactggca
aaagaaggaaaagcctcagattctggtagggtaatggcagctactgatcagagggacagt
aagacacaaaccactgatacaacaagggattctcgcactggctcacaagtccgaacagaa
ggtgcacagctcacagagaatcacaccaccggtgccctgattctgcagccagaactgagt
aatgatgctccggtacctgacaatcaggaggaggatggggatgatgttgtgtttgtttct
tctctccctgcaaatgagaaggctccctctatgagaacatcaggcgttggcaaacagaga
accatcacctccttcccaggcttcagccaaccgcaacagagccaaagctccgctgctctg
cactctcagctctctgctcagctacaacagaaaaaggccaccatggctgcggtgaatctc
caggcactgccagaccgcggggtgaggctcctaaagcaggtgcaggatttggaagatgca
ctgagctctttgtccctctccccagagaccagtgaggagaaagagagcagccaatcggaa
atgattccacccagatctgcccccgcaaacccatttagtaaacctgggccggtggaattg
gccaggggagtgaaaccgctgtccttccatgagctcccgcctatgtccctgggtctgaat
gggtcagcgccagtcccaagtcttagccagaacttcagcagcttatataaagtgaacccg
gagtggcagactctatatggggggcgaatgactgaggaacgtttgtttgctgtaaggaac
gccactagcgaggccattgagcatttgcacaagagcctggagtcctgtcccagccctgaa
aacacggtagaggatcccgcaggactgaaggtaccactgttactgcaccagaaacaggcc
ctggcttggctgcgctggagagaaaaccagacaccaaggggaggaattttggccgatgat
atgggactgggtaagacgctaacaatggtggccctcatactgatgcagaagcagcggcag
aaccgggagcaagagaaaaagctggaggagtggatatctaaaacagactccaccctcgtg
gtcactcgtgggactctcattgtctgcccagcttctcttgtccatcactggaagaaggaa
gtggagaagcgcgtggcagggagcagactgaaagtttatctatatcacggccccagccgg
gaaagagactgcagtgtgctggctgactacgacattgtggtgactacatacagcctggtg
tccaaagagatccctgtgaagaaggaggaaggggatgccccagctaaggaccaggacctg
gaggataaggcgtcaagctcctccccactgctgcggatggcatgggctcgcatcattctg
gacgaggctcataacataaaaaatcccaaagtgcagacctccattgctgtgtgcaagctg
agagccggggcccgctgggctgtgactgggacccccattcagaacaatctgctggacatg
tattccctgctacggttcctgcgctgctctccatttgacgagttcaaattatggaagaat
caggtggataacggcagcaggaaaggaggagagcggctcaacatcctgaccaagagtttg
ctgctcaggagaaccaaggatcagatggaccacttggggcgaccactggtgctgctgccc
cagagacgcagtgagttgcacaaactgaccctcagtgacaaagagaaggccgtgtacgac
gtcatattcgccagatccagatccacactgcagaactatttaaagagacatgaggggggc
acccacatacgaacccaaaatacagacaacccttttgagagagttgccaatgagtttggc
tccagccagtcagaggtctccgccctgccagcttcccaggggtccagcacagtgcatatt
ctgtccctgcttctgcgcctccgccagtgctgtggtcacctgtccctgctcaaggtggtg
ctggagcagctggagctgaagagtgaggggctgagtttgactttggaggagcagctgagt
gccctttctctgactgagtgccagggccccgaccccaaatccactgtctcactcaatggc
accaacttcccctctgagctgtttgacactgagagccaaagcaccaagatttcctccctc
gtgtcagagctcaagaccataaggagcagctccgaggcacaaaagagtgtcattgtgtcc
cagtggaccagcatgctgaagattgtggccgttcacttgaagctgattggcctttcctgc
gccaccattgatgggtcagtgaatcccaagcagcgaatggacatggtggaagatttcaac
aacaaccccaaggggccccaggtgatgctggtttccctgtgtgctgggggcgttggactc
aatctggttggtgggaatcacctgttcctaatggacatgcactggaacccggcgctggag
gaccaggcctgtgaccggatctatcgtgtcgggcagcagaaagatgtggttattcatagg
tttgtttgtttggggacagtagaggagaaaatctcgcagcttcaagagaagaagaaggat
ttggccaagaaggttctgtctgggaacagcgccactttcaccaagctcaccctcgcagat
ctgcgcctactgtttggggtataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (64)   

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