KEGG   Xenopus laevis (African clawed frog): 447241
Entry
447241            CDS       T01010                                 
Symbol
atg4d.L
Name
(RefSeq) LOW QUALITY PROTEIN: cysteine protease ATG4D
  KO
K08342  cysteine protease ATG4 [EC:3.4.22.-]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04136  Autophagy - other
xla04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:xla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    447241 (atg4d.L)
   04136 Autophagy - other
    447241 (atg4d.L)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:xla01002]
    447241 (atg4d.L)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    447241 (atg4d.L)
   03029 Mitochondrial biogenesis [BR:xla03029]
    447241 (atg4d.L)
Peptidases and inhibitors [BR:xla01002]
 Cysteine peptidases
  Family C54: Aut2 peptidase family
   447241 (atg4d.L)
Membrane trafficking [BR:xla04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    447241 (atg4d.L)
Mitochondrial biogenesis [BR:xla03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    447241 (atg4d.L)
SSDB
Motif
Pfam: Peptidase_C54
Other DBs
NCBI-GeneID: 447241
NCBI-ProteinID: XP_041443161
Xenbase: XB-GENE-1016723
UniProt: A0A8J1MNZ9
Position
3L:147651069..147666368
AA seq 478 aa
MNSVSPLATQYGSPKGSQQMENRSTQSGGHEQRKMGHQDATPDGEADEVDKLKSKLLSAW
NNVKYGWSVKMKTTFSRSAPVYLLGERYFFRLDDEIERFQKDFVSRVWLTYRRDFPALEG
TALTTDCGWGCMIRSGQMLLAQGLLLHLLSREWTHGQYRLITVTLXVGNGTPISTLAVPP
SMPLSSLATGHSAGDYQPRTQCSGAPHGDQVHRNIMRWFSDHPGSPFGLHQLVTLGSIFG
KKAGDWYGPSIVAHIIKKAIETSSEVPELSVYVSQDCTVYKADIEQLFAGDVPHAETSRG
AGKAVIILVPVRLGGETFNPVYKHCLKEVLAELPSCFGHLIGGKTXNNSRSMFIGYKDSY
LLYLDPHYCQPYIDTSKNDFPLESFHCNSPRKISITRMDPSCTFAFYAKNSEDFGKLCDH
LMKVLHSPRAEEKYPIFSISEGQAQEYAEGPQSSSHPPVCRKKGPLVKRPSSDEFEFL
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgaattctgtgtcccctctggccacacagtatggaagccccaaaggttcacagcagatg
gagaaccgcagcacccagagtgggggccatgagcagagaaagatgggccaccaagatgcc
actccagacggagaagctgacgaagtggataaactcaagagcaaactgctgtccgcttgg
aacaatgtcaagtatgggtggtcagtgaaaatgaaaaccactttcagccgctctgcacct
gtgtatttgctgggggaacgttacttcttcaggctggatgatgaaattgagcggtttcag
aaggattttgtgtcccgggtgtggctgacgtatagacgcgattttcctgcacttgagggc
acagcactcactacagactgtggctggggctgcatgatcaggagtggccagatgttattg
gcacaaggtctgctcctgcacctgctttcccgagaatggacgcatggtcagtataggctt
ataaccgtaacactttgagtaggaaatggaaccccgatctcgactcttgcagttccaccc
agcatgcccctctcctccttggccacaggccattcagcgggtgactatcagccccgcact
caatgttcaggagcccctcatggagatcaagtccatcggaatataatgcgctggttctca
gatcatccaggctccccttttgggctgcaccagttggtgacattaggaagcatctttggc
aagaaagcaggagactggtatggccccagtattgtggctcacattataaaaaaagcaata
gaaacctcgagtgaagtcccagaactgtcagtttatgtgtctcaggattgcacagtgtat
aaggcagatattgagcagctctttgctggagacgttccacacgcggagaccagcaggggt
gctgggaaggctgtcattatcctggtgcctgtgcgtctgggcggagaaaccttcaaccca
gtttataaacactgtctcaaggaagttctggcggaattgccatcctgttttgggcatcta
attggaggaaaaacctaaaacaactcacgctctatgtttattggatacaaggatagttac
ctgttgtacctggatccacattactgtcagccgtacattgatacgagtaagaatgacttc
ccattagagtctttccactgtaactctcctcgcaaaatctccatcaccagaatggatccc
agttgcacctttgctttctatgccaaaaacagcgaagactttggtaaactctgcgaccat
ctaatgaaggtgctgcactccccccgtgccgaggagaaatatcccatcttcagtatctca
gaaggacaagctcaggaatacgctgaagggccgcagagctcctctcacccccctgtgtgt
cgcaagaaagggccgctagtgaagagacccagctcagatgagtttgaattcttataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

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