KEGG   Xiphophorus maculatus (southern platyfish): 102224111
Entry
102224111         CDS       T02923                                 
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
  KO
K10841  DNA excision repair protein ERCC-6
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    102224111 (ercc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xma03036]
    102224111 (ercc6)
   03400 DNA repair and recombination proteins [BR:xma03400]
    102224111 (ercc6)
Chromosome and associated proteins [BR:xma03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    102224111 (ercc6)
DNA repair and recombination proteins [BR:xma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Other TCR factor
      102224111 (ercc6)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C Pneumovirus_M2 Spt5-NGN CNOT11
Other DBs
NCBI-GeneID: 102224111
NCBI-ProteinID: XP_005815483
Ensembl: ENSXMAG00000002144
Position
22:12963312..12982869
AA seq 1449 aa
MPVEAAEPQASSSFSSPVSAALTPGSLEEDGSARGSAVCTFPENGHGSEAAAAYPANTGP
GEGNIAGKRSGTLLQIDRQRIQVASASSGADELQGLGVFVYDQDVLEQGVLQQVDEAIHE
ASQAAAKAEAEKEYQSVLDDVRSVTSSLKHINKIIEQLSPYAASSKDISRKIESVKRQKE
NKEKQLKKVRAKQKRLQAILGGEDIQRVEAELLAEDDEEESGPSTLGSMLMPAQETEWEE
LIRKGHMTPFGTRIPQKEAKKEPRKLMLAENSAFDQYLADQAKLATERKKVPLLKKKKSS
ALHLHERTKTGKTVSSPKDKKLKKRMRKLQINALKTHPKARPKAEPKLPKPRRKQHTEGE
QTDSEGSEYLPSDEGLDLDQEEREAMNEGFGDSNEDDEYELKPYKKKTVGAGRKKMKKND
SEDEYSPESSDDDNDNNRGRSKKYKDDGDVDYYRQRIRKWKRQRIREREEKRERGEELTD
DSDAEFDEGFKVPGFLWKKLYKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVISFLA
GLSYSKLRTRGSNYRYVGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHETGSFTSNK
EKLIPEIAAGHGILITSYSAVRNLQDILQRYDWHYVILDEGHKIRNPNAGVTVACKQFRT
PHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVQTA
FKCACVLRDTINPYLLRRMKDDVKANLSLPDKNEQVLFCRLTDEQRQVYQSFLDSKEVYQ
ILNGDMQVFSGLIALRKICNHPDLFSGGPRILRGIPEDQLTEEEHFGFWKRSGKLMVVES
LLRLWFKQGQRVLLFTQSRQMLDILEVFVREKDYSYLKMDGTTAIASRQPLIARYNEDKS
IFIFLLTTKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTIYRLLTAG
TIEEKIYHRQIFKQFLTNRILKDPKQRRFFKSNDIYELFTLADPDGTQGTETSAIFAGTG
SDVKVPKKPDRLKSSPSINGISHDYRPSAGKQRESGAENRNALSLGHSSISPSSGNSQGK
SSMPTDSRSTNQNAKNIEMSNSPNTLLVRDGNDSGLVERANKSPTSTSCHQHRDKDRGKH
REKRKHCDSTGTDRHRHKKRKHSRDARFEGHRISHLVKKRTFNKQENEETSTEDQKKCDD
YVLAKLFRKSGIHSVMQHDSIMESSNPDYVLVEAEANRVAKDALKALKISRQQCRLAYNR
PPPPPTKKRFGQKKNSLLVTSSAQPVATSVKCKDAAVVKKSISKKPPSGAHFSGEGADND
SNSALLSSTSLLAKMKARNHIAKPSSQGAAAAAEEEEEEQEENGPGAPGTSSPPAPPTEH
DELLVDLRNFVAFQASVDGEATTQEVLEYFKPRLTQKQAPVFRELLRSICDFHRTCGQEG
IWRLKENFR
NT seq 4350 nt   +upstreamnt  +downstreamnt
atgcctgtagaagctgcagagccccaggcgtcctcctccttctccagcccggttagtgct
gctctcactccaggaagtttggaggaggatggatctgcaagaggatctgcagtctgcact
ttccctgagaacggtcatggttctgaggcagctgcagcctaccctgccaacactggaccg
ggggagggtaacattgctggcaaacggtcggggaccttgctgcagatcgaccgtcagcgc
atccaagtggcatctgccagctccggagcagatgagctgcaaggccttggtgtgtttgtg
tatgatcaggatgtcctcgagcaaggtgttctgcagcaagtggatgaggcgatccatgaa
gcgagtcaggctgcggcaaaagctgaggctgagaaggagtaccagtctgtgctagatgat
gtcaggtctgttacatcatctttaaaacacatcaacaagattattgagcagctgtctccc
tatgcagcctccagcaaggatatcagcaggaaaattgagtctgtaaaacgacagaaagaa
aataaggagaaacagctgaaaaaagtaagagcgaaacagaagcgacttcaggccatactt
ggaggagaggacattcagagagtggaagctgagttgttggcagaagatgatgaagaagaa
tctggaccatccacgctgggcagcatgctcatgccggcacaggagaccgaatgggaggaa
ctcatccggaaaggtcacatgactcctttcggtacccgaattccacagaaggaggcaaag
aaggagcctcggaaactgatgctggctgagaactctgcgtttgaccagtacctcgcggac
caggccaagttggccacagagcggaagaaggtacctcttcttaagaagaagaaaagttct
gcactccaccttcatgagaggaccaaaacaggaaaaaccgtctcctcacccaaggacaaa
aaactgaagaagcgcatgcgaaagctgcagataaatgctttgaaaacccatcctaaggct
cgacccaaggctgagccaaaacttcctaagcctcggaggaaacaacacacagagggagag
cagacagacagtgaggggtcagagtacctgcccagtgacgagggactggacttggaccag
gaggagagggaagccatgaatgagggctttggggacagcaatgaggatgacgaatatgaa
ctaaaaccgtacaagaagaaaactgtgggggcaggaaggaagaaaatgaagaaaaacgac
agtgaggatgaatactcccctgagagttcagacgacgacaacgacaataaccggggtaga
tcaaaaaaatataaagacgacggggatgtggactactacaggcagcgaataaggaaatgg
aagcgacagcggattcgagaacgagaggagaagcgagaaagaggggaggagcttacagac
gacagtgacgcagagtttgacgaaggcttcaaagttcctggtttcctttggaaaaaactg
tacaagtaccagcagaccggtgtgcggtggatgtgggaactccactgtcagcaggcagga
ggcatcctgggagacgagatgggattgggcaaaactatccaggtcatcagctttctggca
ggactaagctacagtaaactgaggactagagggtccaactacagatacgtcggtttaggt
ccaacggtgatcgtgtgcccagccactgtgatgcaccagtgggtgaaggagttccacacc
tggtggcctcctttcagagtggcggtcctgcatgaaaccggctctttcaccagcaacaag
gaaaagttgattccagagatagcagcgggtcatggcatcctgatcacatcatattcagca
gtgagaaatttgcaagacatcttacagcgctatgactggcactatgttatactggatgag
ggccacaagatcaggaacccaaatgctggtgtgactgtcgcctgcaaacagtttcgcact
cctcacagattcatcctgtccggctcaccgatgcagaacaacttgaaggagctgtggtct
ctgtttgacttcgtcttccctggcaaactagggacacttcctgttttcatggagcagttt
tctgtgccaataactatgggaggatatagcaacgcatcacctgtccaggtccagacggcg
ttcaagtgtgcatgtgtgttgagggacacaataaatccttacctgctcaggagaatgaag
gacgacgtcaaggccaacctctccttgcctgataaaaacgaacaggtgctgttctgcaga
ttaacagatgagcagcggcaggtttatcaaagcttcttagattccaaagaagtctaccaa
atactaaatggcgacatgcaggttttctcgggtttgattgcgctgcgtaagatctgcaac
cacccggaccttttctccggcgggccccgaatcctgaggggaatcccagaggaccagctg
accgaggaggaacactttggcttttggaaacgctcgggcaagctgatggtggttgagtcg
ctgctgcgcctctggttcaaacagggccagcgggtcctgctcttcactcagtctagacag
atgctggacatcttggaggtgtttgtgagggagaaggactactcgtacctgaaaatggac
ggtacgaccgcgattgcttcccgacagccgctcattgctcgctacaacgaggacaaatcc
atttttatcttcctgctgaccactaaagttggtggtctgggagtcaatctgactggagcc
aacagagttatcatttatgatccagactggaaccccagcaccgacacacaggctcgagaa
cgagcgtggaggattggtcaaaagcagcaggtaacaatctacaggctgctgactgcaggg
accattgaagagaaaatctaccacaggcaaatcttcaagcaatttctcaccaatcgcatt
ctaaaggatcccaaacaaagacggtttttcaagtctaatgacatctacgagctttttact
ttggctgatcctgacggaacgcagggaacagagaccagtgccatatttgcaggcactggg
tctgacgtaaaagtacccaagaaacctgacaggttaaagtcctcaccctccatcaacggc
atcagccatgattatagaccgtctgcaggaaaacagagagaatccggtgcagagaacaga
aacgcattatcattaggacactccagcatatctccatccagtggaaactctcagggtaaa
tcaagcatgccaacagacagtcggagcacaaaccaaaatgcaaaaaatatagagatgagt
aattctccaaatacgcttcttgtaagagatggtaatgattcgggtttagttgagagagca
aacaaaagcccaacctcgaccagctgccaccagcacagagacaaagacagaggaaagcac
agggaaaaaagaaagcactgtgactccacgggtacggacagacacaggcataaaaaacgg
aagcactcccgggatgctcggttcgaaggccaccgcatctctcatctggtgaagaaacgt
actttcaataaacaagaaaatgaagagacttcgacagaagaccagaagaaatgcgacgat
tatgtcttggcaaagctctttaggaaatccggtatccacagtgtgatgcaacatgacagt
atcatggagtcatccaacccggattatgttctagtggaagcagaagccaacagggtggct
aaagatgcactcaaagcccttaagatttctcggcagcagtgcaggttggcttataacaga
cctcctcctccgcctactaaaaaacgttttggacaaaagaagaattcactcttagtcacg
tcttctgctcagcctgtcgccacttctgttaaatgcaaggatgctgctgttgtgaagaag
tctatctcaaagaagccaccttcaggagctcattttagtggggaaggagcagataatgat
tcaaactcagccctgctgtcgtccacttcactgctggccaagatgaaagctcgaaaccac
atcgctaagccttcctcccagggagcagcagcagcagcagaggaggaagaagaggaacag
gaggagaatggccctggagctccaggaacaagctctcctcctgctccccccactgagcac
gatgagctgctggtggatctgcgcaactttgtggccttccaggcaagtgtggacggcgag
gccaccacgcaggaggtgctggagtatttcaaacccagactgacccagaaacaggcgccc
gtcttcagagagctgctcaggagcatctgtgactttcaccggacctgcggtcaggagggc
atctggaggctgaaggagaactttcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (55)   

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