KEGG   Xiphophorus maculatus (southern platyfish): 102236362
Entry
102236362         CDS       T02923                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03082  ATP-dependent chromatin remodeling
xma03083  Polycomb repressive complex
xma04110  Cell cycle
xma04330  Notch signaling pathway
xma04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102236362
   03083 Polycomb repressive complex
    102236362
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    102236362
   04350 TGF-beta signaling pathway
    102236362
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    102236362
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xma03036]
    102236362
Enzymes [BR:xma01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102236362
Chromosome and associated proteins [BR:xma03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     102236362
   HDAC complexes
    Sin3A-HDAC complex
     102236362
    BRAF-HDAC complex
     102236362
    REST complex
     102236362
    SHIP complex
     102236362
    MiDAC complex
     102236362
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     102236362
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102236362
  Chromatin remodeling factors
   NuRD complex
    102236362
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 102236362
NCBI-ProteinID: XP_005812507
Ensembl: ENSXMAG00000000379
Position
13:complement(16440895..16448764)
AA seq 482 aa
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTFETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHADSGDEDEEDPDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEEEKEGEEKKEVKEEEKEEEKMDTSGPKEEIK
TT
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattattatgacggtgacgtgggg
aactattactacggtcaaggccatcccatgaagccccacaggatccgcatgacgcacaac
ctcctcctcaactacggactctacaggaaaatggagatctataggccgcacaaagccagt
gctgaagagatgaccaagtaccacagcgacgactacatcaagtttctgaggtctatccgt
ccagacaacatgtctgagtacagcaaacagatgcagagatttaatgtcggagaggactgt
ccagtttttgacggtctgtttgagttttgccagctctcgacaggtggctcagtcgctgga
gcagtgaagctgaacaagcagcagacggacatcgccatcaactgggctggtggactccac
cacgccaagaagtctgaggcgtccggcttctgctacgtcaacgacatcgtcctcgccatc
ctggagctgctgaaataccaccagagggtgctctacatagacatcgacatccaccatggc
gacggcgttgaggaggccttctacaccacagacagggtcatgaccgtttccttccacaaa
tacggggaatacttccccggcactggagatctgagggacatcggagcaggaaaaggcaag
tactatgccgtaaactaccctctgagagacggcatcgacgatgagtcttatgaagccatc
ttcaaacctattatggctaaagtcatggagatgtaccagcccagtgctgtggttctgcag
tgtggagcagattctctttctggagaccgactgggctgcttcaacctcaccatcaaaggc
catgccaagtgcgtggagtacatcaaaagcttcaacctacctctgctgatgctgggcgga
ggcggctacaccatccgcaacgtcgcccgctgctggacctttgagacggccgtggccctg
gactcatccatccccaacgagttgccctacaacgattactttgaatacttcgggcccgac
ttcaagctgcacatcagcccctccaacatgaccaaccagaacaccaacgagtatctggag
aagatcaagcagcggctcttcgagaacctgcgcatgctgcctcacgcacccggagtccaa
atgcaggccatccccgaggacgccccacacgccgacagcggagacgaggacgaggaggac
cccgacaaacgcgtctccatccgggcccacgacaagaggatagcctgtgaggaagagttc
tcagactctgaggacgaggccgaggggcaaggtggcggccgcaggaacgcagccaatcac
aaaaaggcaaagagagtgaagaaggaggaagagaaggaaggagaggaaaagaaagaagtg
aaagaggaagagaaagaggaggagaagatggacacatctggaccaaaagaggagataaag
acaacttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (47)   

Download RDF
DBGET integrated database retrieval system