KEGG   Xanthomonas oryzae pv. oryzae MAFF 311018: XOO4057
Entry
XOO4057           CDS       T00360                                 
Symbol
XOO4057
Name
(GenBank) conserved hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
xom  Xanthomonas oryzae pv. oryzae MAFF 311018
Pathway
xom03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xom00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XOO4057 (XOO4057)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xom03021]
    XOO4057 (XOO4057)
   03019 Messenger RNA biogenesis [BR:xom03019]
    XOO4057 (XOO4057)
Transcription machinery [BR:xom03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     XOO4057 (XOO4057)
Messenger RNA biogenesis [BR:xom03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     XOO4057 (XOO4057)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 AAA Spore_III_AA OB_RNB Mor AAA_22 ResIII
Other DBs
NCBI-ProteinID: BAE70812
Position
4575640..4576920
AA seq 426 aa
MPEGFPVYSLSDLKRMPAQKLLDIADQLNIQEGVARARKQDVIFALLKVLTRHGEGVAAD
GVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFA
LSIVDTINGEPLEASKGKVLFENLTPLFPRRRFRLERGDGSTEDITGRILDLMAPQGKGQ
RALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRTVRGEVISSTF
DEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAN
ALHRPKRFFGAARNVEEGGSLTVIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRITEK
RVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKTTKSNDEF
FSSMKR
NT seq 1281 nt   +upstreamnt  +downstreamnt
gtgccggaaggcttcccggtctattcgctgagcgatctcaagcggatgccggcgcagaag
ctgctggatatcgccgatcagctcaatatccaggaaggcgtggcgcgtgcgcgcaagcag
gacgtgatcttcgccctgctcaaggtgctcacccgtcatggcgaaggcgttgccgccgat
ggcgtgctggaaatcctgccggacggcttcggtttcctgcgtgctgcggaagccagctac
ctggccggcccggacgatacctatatttcgcccagccagatccgccgcttcaatctgcgc
accggcgaccatctgtccggccgcatccgcttcccgaaggacggcgaacgctatttcgcg
ctgtcgatcgtcgacaccatcaacggtgagccgctggaagcgagcaagggcaaagtgctg
ttcgagaacctgaccccgctgttcccgcgtcgccgcttccgtctggagcgtggcgatggc
tccaccgaggacatcaccggccgcatcctggatctgatggcgccgcagggtaagggtcag
cgtgcgctgatcgtctctccgcccaaggccggtaagacgatgatgatgcagcaggtggcc
acggccatcaccaccaatcaccccgaagtgcacatgatcgtgctgctcatcgacgagcgc
ccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaagtcatctcctccacgttc
gacgagccggctgcgcgccacgtgcaggtcgccgagatggtgatcgagcgggccaagcgc
ctggtcgagcacaagaaggacgtggtgatcctgctggactccatcacccgtctggcgcgc
gcctacaacaacgtggtgcccagctccggcaaggtgctcaccggtggtgtggacgccaat
gccctgcaccgcccgaaacgcttcttcggtgcggcgcggaacgtggaagaaggcggctcg
ctgaccgtcatcgcgacggcgctggtggaaaccggcagcaagatggacgaggtgatctac
gaagagttcaagggcaccggcaacagcgaagtgcatctgaaccgtcgcatcaccgaaaag
cgtgtgtacccggcaatcgacatcaaccgttcgggcacgcgccgcgaagacctgctgatc
gagccggagctgctgcagaagatctggatcctgcgcaagctgctgcacccgatggacgaa
atcgccgcgatggaattcctgctggacaagatgaagaccaccaagtccaacgacgagttc
ttcagttcgatgaagcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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