KEGG   Xanthomonas perforans: BJD13_02310
Entry
BJD13_02310       CDS       T04778                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
xpe  Xanthomonas perforans
Pathway
xpe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BJD13_02310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xpe03400]
    BJD13_02310
Enzymes [BR:xpe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BJD13_02310
DNA repair and recombination proteins [BR:xpe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BJD13_02310
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII UB2H RecG_dom3_C ERCC3_RAD25_C AAA_16
Other DBs
NCBI-ProteinID: APO98038
UniProt: A0A0G9DQ03
Position
complement(144334..147798)
AA seq 1154 aa
MPSPTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEA
DLHALLGEQAALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTL
LQQLAPLSYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADTPLRVELLDEDIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRE
RFDVDTRRSALYQDLKSGLAPSGIEYYLPMFFAKTATLFDYLDKRVLPVIATGVSNAADA
FWAQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWASDHARIDEAAPLG
DQPLPPLPVAAKDAPAGQALATFLSHYPGRVLIAADSAGRREALMEVLAAAQLKPELVAD
VPAFLAGTLRFAITVAPLEDGFALDQPQIALLTERQLFPERANQPRRTRRVGREPEAIIR
DLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWTRAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYEP
FAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASADKQV
AVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGEIDVIIGTHR
LLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSEL
VPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGADVELHVASL
IPEDYLPDVHTRLTLYKRISSARDPDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQAN
ALGVRKLDLGENGGRLVFEAKPAIDPMTIIQMIQKQPKIYTMDGPDKLRIKLPMPEGADR
FNAARGLLAALSPG
NT seq 3465 nt   +upstreamnt  +downstreamnt
atgccgtcgcctaccttcccctccccgccgctgcccaagtccggccagctccgcgcctac
tggcgcgctccgtcctctcctactgcgctggcctggtcgattgcgcgggcagccgaagcg
catgccggcccgttgctggtcatcgcacgcgataatcagagcgcgcaccagatcgaagcc
gatctgcatgccttgctcggcgaacaggcggcactgccggtggtgccgtttcccgattgg
gaaaccctgccctacgaccagttcagcccgcatccggaaatcatcagccagcggctggcc
gccctgcaccgcctgcccggcctgacccgcggcgtggtgatcgtgccggtgcagaccttg
ctgcagcagctggcgccgctgagctacatcgtcggcggcagcttcgatctcaccgttggc
cagcggctggatctggatgcggaaaagcgtcgcctggaaagcgccggctaccgcaatgtg
ccgcaggtgatggacccgggcgatttcgcggtgcgcgggggcctgctggacgtgtttccg
atgggcgcggacacgccattgcgcgtcgagctgctggatgaggacatcgattcgatccgc
gtgttcgacccggaatcgcagcgctcgctggacaaggtggacgcggtcaagatgctgccg
ggccgcgaagtgccgatggacgatgccagtgtggagcgcgtgctggcctgcctgcgcgaa
cgcttcgacgtggatacccggcgcagcgcgctgtaccaggacctgaaatccgggctggcg
ccatcgggcatcgagtattacctgccgatgttcttcgccaagaccgcaacgctgttcgat
tacctggacaagcgcgtgctgccggtgatcgccaccggcgtgtccaacgccgccgacgcc
ttctgggcccaggcgcagaaccgctacgaacagcgccgccacgatgtggagcgcccgctg
ctgccgccggacgagctataccaatcgccggatgcactgcgcgagcggctcaacaagctg
gcgcgtatcgaagtatgggccagcgatcatgcgcgcatcgatgaggccgccccgctcggc
gaccaaccgttgccgccgctgccggtggccgcaaaggacgcgccggccggccaggcgctg
gcgacgttcctgagccattatccgggccgcgtgctgatcgctgccgattcggccggccgc
cgcgaagccttgatggaagtgctggccgccgcgcagttgaaaccggagctggtcgccgat
gtgccggcgttcctggcgggcacgctgcgttttgccatcaccgtggcgccgctggaggac
ggctttgcgctggatcaaccgcagattgcgctgctgaccgagcgccaactgttcccggag
cgggccaatcagccgcgccgcacgcgtcgggtcggacgcgagccggaagcgatcatccgc
gatctgggcgaactgtccgaaggcgcgccgatcgtgcacgaggatcatggcgtgggccgt
taccgcggcctgatcgtgctcgatgccggcggcatgcccggcgagttcctggaaatcgaa
tacgccaagggcgaccggctctatgtgccggtggcgcagttgcacctgatcagccgttat
tccggcgcctcggccgagaccgcgccgctgcattcgttgggcggcgagcagtggacccgt
gccaagcgcaaggctgccgagaaggtgcgcgacgtggccgccgaactgctggagatccag
gcacgtcgccgtgcacgcgccggcctggcgttgcaggtggaccgcgcaatgtacgagccg
ttcgcggccggatttccgttcgaggaaaccggcgaccagttggccgccatcgatgcgacg
ctgcgcgatctgggcagcagccaaccgatggaccgcgtggtgtgcggcgacgtgggcttc
ggcaagaccgaagttgcggtgcgtgcggcgtttgccgccgccagcgccgacaaacaggtc
gccgtgctggtgcccaccacgttgctggccgagcagcactaccgcaatttccgcgaccgc
ttcgccgattacccgatgaaggtggaagtgctgtcgcgcttcaagagcaccaaggaaatc
aaggccgaactggaaaaggtcgccagcggcgagatcgacgtcatcatcggcacgcaccgt
ttgttgcagccggatgtgaagttcaaggatctcggcctggtcgtggtcgacgaagaacag
cgctttggcgtgcgccagaaggaagcgctcaaggcgatgcgtgccaacgtgcacctgctc
acgctcaccgccacgccgatcccgcgcacgctcaacatggccatggccggcctgcgcgat
ctgtcgatcatcgccaccccgccgccgaaccgcctggcggtgcagaccttcattactgcc
tgggacaacacgctgctgcgcgaagccttccagcgcgaactcagtcgcggtggtcagctg
tatttcctgcataacgatgtggaaagcatcgtgcgcatgcagcgcgatctgtcggaactg
gtgccggaagcgcgcatcggtatcgcgcatgggcagatgcccgagcgcgagctggaacgg
gtgatgctggatttccagaagcagcgcttcaacgtgttgctgtcgaccacgatcatcgaa
tcgggcatcgacattcccaatgccaacaccatcatcatcaaccgcgccgaccgctttggc
ctggcgcagttgcaccagttgcgcggccgcgtgggccgctcgcatcaccgcgcctacgcg
tacctggtggtgccggatcgccgctcgatgacctcagatgcagaaaagcgcctggaagcg
attgcctcgatggacgagctcggcgccggcttcaccctggccacgcacgacctggaaatc
cgcggcgccggcgaattgctgggcgaagaccagagcggccagatggccgaagtcggtttc
agcctctacaccgaactgctcgagcgcgcagtgcgcagcatccgccagggcaagctgccc
gacctggatgccggcgaagaagtgcgcggtgccgacgtcgaactgcacgtggcctcgctg
attcccgaggattatctgcccgacgtgcacacacgcctgaccttgtacaagcgcatttcc
agcgcacgcgaccccgatgcgctgcgcgaactgcaggtggagatgatcgaccgcttcggc
ttgctgccggacccggtcaagcatctgttcgccatcgccgagctcaagctgcaggccaat
gcgctgggcgtgcgcaagctggacctgggcgaaaacggcgggcggctggtgttcgaggcc
aagccggcgatcgacccgatgaccatcatccagatgatccagaaacagccgaagatctac
acgatggatggcccggacaagctgcgcatcaagttgccgatgcccgaaggcgccgaccgt
ttcaatgcggcacgcggcctgttggcggcattgtcaccgggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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