KEGG T03566: SB85

Xanthomonas sacchari: SB85_03930

Entry

SB85_03930        CDS       T03566

Name

(GenBank) DEAD/DEAH box helicase

K05591

ATP-dependent RNA helicase DbpA [EC:5.6.2.6]

Organism

xsa Xanthomonas sacchari

Brite

KEGG Orthology (KO) [BR:xsa00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:xsa03009]
    SB85_03930
Enzymes [BR:xsa01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     SB85_03930
Ribosome biogenesis [BR:xsa03009]
Prokaryotic type
  rRNA helicases
   SB85_03930

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII AAA_22 AAA_19

Other DBs

NCBI-ProteinID:

AJC45045

Position

966233..967609

AA seq 458 aa
MNDFATLSLSPALAPGIDALGYTRMTPVQAQSLPPILAGQDVIVQAPTGSGKTAAFGLGL
LHKLDPAMSRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLAPQLASLEA
HDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQS
LLFSATFPEEIRALARDLLKEPAEITVEGADSAPEIDQHFFEVDPTYRQKAVAGLLLRFT
PESSVVFCNTRKEVDEVAGSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDV
AARGLDVEDLAAVINYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARAQALETEQ
GQPLRWSRAPLATARPAQLPQAAMVTLRIDGGKTDKLRPGDILGALTGDAGLSGAAIGKI
AIYATRSYVAIARAHAGKALAQLQAGKIKGRRFRVAKL

NT seq 1377 nt +upstreamnt +downstreamnt
atgaacgatttcgccaccctctccctttccccggcgctcgcgcccggcatcgacgcactc
ggctacacccgcatgaccccggtgcaggcgcagagcctgccgccgatcctggccggccag
gacgtcatcgtgcaggcgcccaccggcagcggcaagaccgcggcgttcggcctgggcctg
ctgcacaagctggatccggcgatgagccgtgcgcaggcgctggtgctgtgcccgacccgc
gaactggccgaccaggtcggcaagcagttgcgcaagctggccaccggcattcccaacatg
aaactggtggtgctgaccggcggcatgccgctggcgccgcaactggcctcgctggaggca
cacgacccgcaggtggtggtcggcacgcccggccgcatccaggaactggcgcgcaagcgc
gcgctgcaccttggcggcgtgcgcacgctggtgctggacgaggccgaccgcatgctcgac
atgggcttcgaggagccgatccgcgagatcgccagccgctgcgacaagcatcggcagagc
ctgctgttctcggccaccttccccgaggaaatccgcgcattggcgcgggacctgctgaag
gaaccggcggaaatcaccgtcgagggcgccgacagcgcgccggagatcgaccagcatttc
ttcgaggtcgaccccacctaccggcagaaggcggtggccggcctgctgctgcgcttcacc
cccgagtccagcgtggtgttctgcaatacccgcaaggaggtcgacgaggtcgccggatcg
ctgcagcagttcgggttctccgcgctggcgctgcatggcgacatggaacagcgcgaccgc
gacgaggtgctggtgcgcttcgtcaaccgcagctgcaacgtgctggtcgccagcgacgtg
gccgcgcgcgggctggacgtggaagacctggcggcggtgatcaactacgaactgccgacc
gacaccgagacctaccgccaccgcatcggccgcaccgcgcgcgccggcaagcacggcctg
gcgctgagcctggtggcgccgcgcgagaccgcgcgcgcgcaggcgctggaaaccgagcag
ggccagccgctgcgctggtcgcgcgcgccgctggctaccgcacggccggcgcagctgccg
caggcggcgatggtcaccctgcgcatcgacggcggcaagaccgacaagctgcgtcccggc
gacatcctcggcgcactgaccggcgatgccgggctgtccggcgcggcgatcggcaagatc
gcgatctacgccacacgctcctacgtcgccatcgcccgcgcccatgccggcaaggcgctg
gcgcagctgcaggccggcaagatcaagggccgccggttccgggtcgccaagctgtaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

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