KEGG   Xenopus tropicalis (tropical clawed frog): 100038138
Entry
100038138         CDS       T01011                                 
Symbol
sdc1
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04512  ECM-receptor interaction
xtr04514  Cell adhesion molecules
xtr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100038138 (sdc1)
   04514 Cell adhesion molecules
    100038138 (sdc1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100038138 (sdc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xtr04131]
    100038138 (sdc1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:xtr04090]
    100038138 (sdc1)
   00535 Proteoglycans [BR:xtr00535]
    100038138 (sdc1)
Membrane trafficking [BR:xtr04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    100038138 (sdc1)
CD molecules [BR:xtr04090]
 Proteins
  100038138 (sdc1)
Proteoglycans [BR:xtr00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   100038138 (sdc1)
SSDB
Motif
Pfam: Syndecan Glycophorin_A
Other DBs
NCBI-GeneID: 100038138
NCBI-ProteinID: XP_031758827
Xenbase: XB-GENE-494960
UniProt: A0A803JF35
Position
5:complement(143192685..143228505)
AA seq 584 aa
MDKLLVALYLLGVCCSVAIMDEVRSSPLDDLEASGDDEDFISGSGIEDFEVDDTVPSTSV
LPSVLIFAPENTSPQPNLDEKDAAVEHTTIEVATTKSNEDPIEELVEPVVVVGVGHDVTT
HKPTTHRPTTVKSTAGPLESSTEQNHHPHHHHPHHHHHHTTTTKPTTAKDQLEDNSDSPS
GEDKSYVHYIHHKVTTTSPPDNEEPDVQIPDQDSPSGSSSTPYMEYEETTEDPSGARIFI
GHDETATTKPSENEEDDGMFEGHHEKPTTTSSSNEAGSHVQHDHHKTTSSPSHHVEPDVE
VHHSTTAADLNKHHHHHHHHHPHHHTTPETTTSVDKNIPHHVDDSTTPADLNKHHHHHHH
HHPPTTPETTTSVDEEIPPHVDDSKAPTDLDKHHHHHHHHPHHHTTTESTTSTTSDTKHA
DEVPVEVGKGRMAHGASATSAVPVLDEEVNIPDLVDLSTGNNSAVLEEGETDSKEGESSG
EENFFFVNREVIQKGTAPPINRMINTDGAEKESSPDASHGIMERKEVLAGIIAGGVAGLA
FAVFLVGFMLYRMKKKDEGSYSLDEPKQSNGGYQKPREQREFYA
NT seq 1755 nt   +upstreamnt  +downstreamnt
atggacaagttattggttgccctgtacttgctgggagtgtgctgctcggtggctataatg
gatgaagtgagatcctctccattggacgatctagaagcatcaggagatgacgaggacttc
atctctggctcaggaattgaggattttgaagtagatgatacagtgccttctacatcggtg
ttgccttctgtgctcatttttgcaccagaaaatacatcaccacagcccaacttagatgaa
aaagatgctgcagtagagcataccaccatagaggtggcgacaaccaagtcaaatgaagat
cctattgaggaattagttgaacctgttgttgttgttggtgtaggacatgatgtgactacg
cacaagcctactactcaccgtccaaccactgtgaaatccacagctggtccactggagagt
agcacagaacaaaaccatcaccctcatcaccatcatcctcaccaccatcatcaccataca
accacaaccaaaccaactactgccaaagatcaacttgaagataactcggatagtccatca
ggtgaggataagtcttacgttcactacattcaccacaaagtaacaactacaagtcctccg
gacaatgaggagcccgacgtgcaaattcctgaccaagactctccatctggatcatccagt
acaccttatatggaatatgaggagacaactgaagatccttctggtgcacgaatatttatt
gggcatgatgaaacggcaactacgaaaccttctgaaaatgaggaggatgatggtatgttt
gaaggtcatcatgagaagccaacaaccacaagttcgtccaatgaggcaggttcccatgtc
cagcatgatcaccataaaacaacttccagtccatcccaccatgttgagcctgatgtagaa
gtgcatcacagtacaacagctgcagatctgaataaacatcatcatcaccatcaccaccac
catcctcatcatcatacaactccagaaacaaccacgtcagttgataagaatataccacat
catgtagatgacagtacaactcctgcagatttgaataaacatcatcaccatcatcaccac
caccatcctcctacaactccagaaacaaccacatcagttgatgaggaaatacctcctcat
gtagatgacagtaaagctcctacggatctggataaacatcatcatcatcaccatcaccat
cctcatcatcatacaactacagaaagtaccacatctactacaagcgataccaagcacgca
gatgaggttcccgtagaagtgggtaagggaaggatggcccatggtgcttcagcaactagc
gctgttcctgtattggatgaagaagtcaacatccctgatctagtagacttgtcaactggt
aacaactctgctgtgctggaagagggtgaaactgactctaaagaaggtgaatcatcaggg
gaagagaacttctttttcgttaatcgtgaagttatccagaagggcacagcacccccaatc
aacaggatgataaatactgatggtgctgaaaaagaaagcagtcccgatgcatcccatgga
ataatggagaggaaagaagttttagcaggaatcattgcaggaggcgtagccggcttggca
tttgcagtctttttagttgggttcatgctctataggatgaagaagaaagacgaaggaagc
tactctttggatgaaccaaaacaatcaaatggaggataccaaaagccacgtgaacagcgg
gaattctatgcgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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