KEGG   Xenopus tropicalis (tropical clawed frog): 100135076
Entry
100135076         CDS       T01011                                 
Symbol
tnr
Name
(RefSeq) tenascin-R precursor
  KO
K06252  tenascin
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510  Focal adhesion
xtr04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100135076 (tnr)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100135076 (tnr)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xtr00536]
    100135076 (tnr)
Glycosaminoglycan binding proteins [BR:xtr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100135076 (tnr)
SSDB
Motif
Pfam: fn3 Fibrinogen_C Pur_ac_phosph_N EGF_Tenascin EGF_2 DUF4249 Lzipper-MIP1
Other DBs
NCBI-GeneID: 100135076
NCBI-ProteinID: NP_001107287
Xenbase: XB-GENE-948286
UniProt: A9JRJ1
Position
4:complement(98315866..98491483)
AA seq 1350 aa
MGSEGVSSALGPLQVGVHLILLACLTRRSQCQSELTGQTPRLDIQVDKGGNMTDHGIENK
QNPMVFNHVYNFNVPLSFPCTLEPETPEDGSWVTQQTENTADAGSQITFTHSIRVPQRLC
QCYTTPHAVQHLLSRIEALEREVMLLRERCNDRACQDAEATGLTEFAPPCSGHGNFTVDS
CICNQGWGGENCSEPLCPLECSGRGTCIEGMCVCEPDYTGEWCTDLLCPEECSPHGLCQD
GQCVCQDPYIGIGCTELRCPGDCLGKGRCANGTCVCQDGYAGEDCGRMWCINACSGRGQC
QDGVCECEEGYSGQDCSEVAPPVDFSVTAVGDHWMDLAWEGTTAVTEYVISYQPAVPGEW
GTQQRLQQRVPGDWSSVTIRELEPGVTYNISVCSVISDIISEPASITISTHISSPRGLNF
MEVTQTSVEVHWDPPVFPLDGWEISFTPKNNEGGLTVQLPSSVTSFNQTGLKPGEEYTVS
IISLKDQARSPATSGSISTDIDGPTNILVRDVTDTVAFVEWTPARAKLDFMQLDYGPING
EGEKTTFRLQPPLSQYSMQVLRPGSQYEISIRGVRGDTESEPVRATFTTELDAPKNLRVI
SHASSTLELEWDNSEAEGEGYRVVYSTLAGDQYHELIVPRNYGQTTKATLTDLIPGTEYG
IGISAIRYNLKSAPATMNARTELDSPTDLMVTGSTDKSISLTWTKARGPIDHYRISFTPS
SGMASEVTVPSDISQYELSELEPGTEYTISIFAERGRQQSKETTIDAFTGFRPITQLHFS
AVTAYSVNVSWTDPSPPPDQFILTYNPIDSKDPLQLFLDPSLRQTRLSALQPSTEYMVTL
LPVHGTVRAELVEGTVTTGVAPPMDLSVINVTENSLAVVWRPPPSSLHHYRLTYQSTKGR
MDSVVIGNDQTRYTLANLMPNTEYKISLRSVRGREESERVGIVSWTAVDPPYGLRTSNIT
ATEALLHWEPPRSEVESYVIIVTHHAGSGETILVDGESIEFQLQNLLPRTNYSVTLSANF
GHQTSRSVGVSFTTILDPPMNLTATEVARTSALISWQPPISPIENYILTYKSANESRKEL
IVDAEDTWIRLEGLLESTEYTVSILSVQNGERSSVTHTVFTTGGRVFSYPQDCAQHMLNG
DNQSGVYYIYINGDMSQSVPVYCDMATDAGGWIVFQRRQNGLTDFFRKWADYRVGFGNLE
DEFWLGLDTLHQVTSQGRYELRIDMRDGQEAVYAYYNKFNIGDARSLYKLRIGDFNGTSG
DSLTYHQGRPFSTKDRDNDVAVTNCASSYKGAWWYKNCHRTNLNGKYGESRHSQGINWYH
WKGHEFSIPFVEMKMRPYNHRTMKKRSLQL
NT seq 4053 nt   +upstreamnt  +downstreamnt
atggggagtgagggtgtgagcagtgccttaggacctctgcaagtgggagtacatctcatc
ttgttggcttgcctaactaggcgctcacagtgccaaagtgaattaacaggccaaacacca
agactggacatacaggttgacaaagggggtaacatgactgatcatggcattgaaaacaag
cagaaccctatggtcttcaaccatgtctataactttaatgttcccttgagcttcccctgt
acacttgaaccagaaactccagaggatgggagttgggtgacacagcaaacagagaatact
gcagatgctggaagccaaataacctttacacacagcatacgtgtcccccagaggctgtgc
cagtgctacaccacacctcatgctgtgcagcatctcctgagcaggattgaagctttggaa
agagaggtgatgctgctcagggagcgatgtaatgacagagcatgtcaggatgctgaagct
acaggtctcacagagtttgcaccaccttgcagtggacatggaaacttcactgtagactca
tgtatttgtaaccaaggttggggtggtgagaactgctcagagcctctttgccctctggaa
tgctctggaagaggaacctgcatagaagggatgtgtgtatgtgagccagattacacaggg
gaatggtgcacagatctgttatgccctgaggagtgcagcccccatgggctgtgccaagat
ggacagtgtgtatgccaagatccatacattggaataggctgcacagagctacgctgccct
ggcgattgtttggggaaaggacgttgtgccaatgggacttgtgtttgccaggatggatat
gcaggagaagactgtgggcgtatgtggtgtataaatgcctgcagtggacgcgggcagtgc
caagatggggtctgtgagtgtgaagaaggatacagtgggcaggattgttcagaagttgcg
ccacctgtggattttagtgtaacagctgttggtgatcattggatggaccttgcatgggaa
ggaaccactgctgtgacagaatatgttatttcataccagccagcagtgccaggagagtgg
gggactcaacagcggctccaacagagggtcccaggagactggagttcagtaaccattagg
gagctggagccaggagttacatacaatattagtgtctgctctgtcatcagtgatattatc
agtgagccagctagtatcactatatccacacatatttcgtcaccacgaggattaaatttt
atggaagtgacacagacctcagtggaagtgcactgggacccaccagtgttccctctcgat
ggctgggaaataagcttcactcccaagaataatgaaggaggactgacggtccagcttcca
agcagtgtcacttcctttaaccagacgggcctaaaaccaggagaagaatacaccgtgagc
atcatttctctaaaggatcaggcacggagccccgcaacatctggcagcatttcgactgac
atagatggacctaccaatatcctggttcgtgatgttactgacacagttgcatttgtggag
tggacaccagctagagcaaaactggacttcatgcagcttgactatggacctataaatggg
gaaggggaaaagactacctttcgtctccagcctcctttgagccagtattccatgcaggtc
ctacgtccaggttcacaatatgaaatatcaattcgaggggtgcggggagacactgagagt
gaaccagtccgtgctactttcaccacagagttagatgctccaaaaaaccttcgagtgata
tcccatgcctcatccacattggaactggagtgggataacagcgaggctgagggtgagggc
taccgcgtagtctatagtacccttgctggggatcaataccatgaactcattgtgccaagg
aactacggccagaccactaaagctacacttacagatcttatcccaggaacagaatatggt
ataggaatttctgccatccgctataatctcaagagcgctcctgcaacgatgaatgcacgc
actgagttagacagtccaactgatctaatggtaactgggtccacagacaagagcatatca
ctgacctggacaaaagccagaggtccaattgaccattaccggatctctttcactccttcc
tctggcatggcttctgaagtcacagtccccagcgatatttcacagtatgaactctctgag
ttagaacctgggacagagtataccatctctatttttgcagaaagagggagacagcaaagc
aaagagacaactattgatgcattcactggtttccgccctatcacgcagcttcatttttct
gcagttacggcatatagtgtaaatgtgtcgtggactgacccttctccacccccggatcaa
ttcattctgacttacaaccccattgacagcaaagatcctctacagctctttttagacccc
tcgttgagacaaaccagactttcagctcttcaaccttccacagaatacatggtcaccctt
ctaccagttcacggaactgtcagagcagagcttgtggaaggcacagtcacaacaggtgtg
gctcccccgatggacctttctgtaataaatgtcactgaaaactcattggctgtggtgtgg
agaccacctccttcctctttacaccactacagactaacttaccaatctaccaaagggagg
atggacagtgtggtgattggaaatgaccaaacacggtataccctggcaaatctcatgcct
aatacagaatacaagataagtttgagaagtgttcgagggcgtgaagagagtgaacgtgtt
ggcattgtgtcatggacagctgttgatcccccatatggcttgaggaccagcaatatcact
gccacagaagcccttctacactgggaaccaccacgatcagaagtggagagctatgtcatc
atagtaacacaccatgcaggttcaggagaaacaatccttgtggatggggagagcatagaa
tttcagctgcagaaccttctcccacgcaccaattattcagtgacactatctgctaatttt
gggcaccaaaccagtcgatctgttggggtcagcttcacaacaattctggatccacccatg
aatctgactgccacagaagtggcaaggactagtgcgttaatttcttggcagccacccatc
tctcctattgaaaattacatcctcacttataaatctgctaatgagagccggaaggagctg
atagtagatgctgaggacacatggatccgcctggaaggcttactggagagtacagaatac
actgtgagcattctgtctgtgcagaatggggagcggagctcggtcacccacactgtattc
actacaggagggagggtgttttcctacccacaagactgtgctcagcacatgctgaatgga
gacaaccagagtggagtctattatatttatatcaatggtgacatgagccaaagtgtccct
gtatactgtgacatggctactgatgcaggaggctggattgtatttcaaagacgccagaat
ggattgacagattttttccgcaagtgggcagattatcgtgtaggttttgggaacctggag
gatgagttttggctgggacttgacactcttcatcaggtgacctctcaggggcgctacgaa
ctgcgaattgatatgcgggatggacaagaagcagtctatgcatattataataagttcaac
attggcgatgcccgaagtttatacaagctgcgtatcggggacttcaatgggacatcaggt
gattcactcacttaccaccagggacgaccattctctacaaaggatagagacaatgatgtt
gctgtaacaaattgtgcctcttcatataaaggagcatggtggtataagaactgtcaccgt
acaaacctgaatggcaaatatggtgaatcccggcacagccagggaataaactggtaccac
tggaaaggtcacgagttttccattccttttgtggagatgaagatgcggccatataatcat
cgtaccatgaaaaaaaggtccctccagctttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

Download RDF
DBGET integrated database retrieval system