KEGG   Xenopus tropicalis (tropical clawed frog): 100145052
Entry
100145052         CDS       T01011                                 
Symbol
twistnb
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA43
  KO
K03004  DNA-directed RNA polymerase I subunit RPA43
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100145052 (twistnb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    100145052 (twistnb)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Pol I specific subunits
     100145052 (twistnb)
SSDB
Motif
Pfam: RPA43_OB SHS2_Rpb7-N Silic_transp
Other DBs
NCBI-GeneID: 100145052
NCBI-ProteinID: XP_002933336
Xenbase: XB-GENE-5812677
UniProt: F7BDD1
Position
6:complement(38625450..38633432)
AA seq 471 aa
MAEAETAADSSVPEATAPARALPSLALPSFSEACELVRSRYSCLVVETHRRHLTLSPKFL
QKKRSGIQEQLNTDLLKYNEGLKGVPVAYDSIKLVGELGDIFDDLGHIHINIEADFVIFN
PKCGQTLVGIVNKVAPTHIGCLVHGCFNASIPKPPKMPIENWQRIGVNIDDEIEFEVFRL
DSDAVGVFCIRGKLDRRMEDKAYETPCEETAEQADDGTSDKDADALESSNMESSVQENGD
VQEKAKKKRKKQKLQESLTQEAESTGDHSIVTDPNLESPGELHEDISNKERKKKKHRNVP
GQNSESDAEKGVDSTILEDGNITESPVNFKPKKSKKKSKEISNSNSTSAFLNGVVEDESF
SESATVEPEEMTASGGDPDKVKKKHKHSFVEQIPDSDLVTCISSEGSLTKGLVISQETPK
AKKHKAKHQEHLLPGSGSGSSQSKHKKAKRHHENEPDTLAAEPKIKKRHKE
NT seq 1416 nt   +upstreamnt  +downstreamnt
atggctgaagctgagacagcagcggattcctcggtgccggaggctactgcccctgctagg
gctctgccttctcttgcgcttccatcgttctctgaggcctgcgagttagttagaagccgc
tattcgtgccttgtggttgagacacataggagacatttaactctttctcccaagtttctg
cagaagaaacggagcggtatccaggagcagctcaataccgacctgctaaagtacaatgag
gggctgaaaggagtcccagttgcttatgacagtataaaattggttggagaactgggtgat
atctttgatgatctaggacacattcatataaatatagaggcagactttgtcatctttaac
cctaaatgtggacagacacttgtgggtattgtcaataaagttgcacccacacatataggt
tgtttggtacatggctgtttcaacgcttccatacccaagcctcccaagatgcccattgaa
aattggcagcgtattggtgttaacatagatgacgagatagagtttgaagtattccgttta
gattctgatgctgtcggtgtattttgtatacgtggaaagctggatagaagaatggaagat
aaagcttacgaaaccccatgtgaagaaactgctgagcaagctgatgatggaacatctgat
aaagatgcagatgccctggaaagctcaaatatggaatccagcgtccaagaaaatggtgat
gttcaggaaaaagcaaagaaaaaacgcaagaaacagaaattgcaagagtcgcttacacag
gaagctgagagcacaggagatcattctatagtcacagatccaaatctagagagtcctgga
gaattgcatgaagacatttcaaataaagaacgcaagaaaaagaagcacaggaatgttcct
gggcaaaatagtgaatctgatgctgagaaaggtgtggacagtacaatccttgaagacggc
aatattactgaatcaccagttaattttaaaccaaagaaatccaagaagaagagtaaggag
ataagtaattctaatagtacctctgcttttctcaatggagtagtagaagatgaaagtttt
tcagaaagtgccactgttgaaccagaagaaatgacagcaagtggtggtgacccagataag
gttaagaaaaaacacaagcactcttttgtggagcagatcccggacagtgaccttgtcact
tgtatctcatccgaaggatctctcaccaaaggccttgttatctctcaggaaactccaaag
gcaaaaaagcataaagcaaaacatcaggaacatttactgcctggcagtggctcagggtca
tcccaaagcaagcacaaaaaggcaaaaagacaccatgaaaatgaaccagatactttggct
gcagaacccaagattaaaaagagacataaagaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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