KEGG   Xenopus tropicalis (tropical clawed frog): 100145546
Entry
100145546         CDS       T01011                                 
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
  KO
K14402  cleavage and polyadenylation specificity factor subunit 2
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100145546 (cpsf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    100145546 (cpsf2)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     100145546 (cpsf2)
    U7-dependent histone pre-mRNA processing factors
     100145546 (cpsf2)
SSDB
Motif
Pfam: Lactamase_B_6 CPSF100_C Beta-Casp RMMBL Lactamase_B Beta_lactamase3 Lactamase_B_2 ODP Prion
Other DBs
NCBI-GeneID: 100145546
NCBI-ProteinID: NP_001120452
Xenbase: XB-GENE-950595
UniProt: B1H337
Position
8:87336904..87349205
AA seq 783 aa
MTSIIKLTTLAGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYSTIPVYKMGQMFMYDLYQSRHNTEDFSLFSLDDVD
CAFDKIQQLKYSQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMISRPSLLITDCFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHGFSDLARVPSPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRTT
PGTLARFLIDHPSERIIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADLDSS
DDSDAEEDIDQTTSHKAKHDLMMKNEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEDEKTKLESGLTNGEEPMDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDLAEACRAFGGKDIKVYTPKLHETVDAT
SETHIYQVRLKDSLVSSLKFCKAKDTELAWIDGVLDMRVSKVDTGVILEEGELKDEGEDS
EMQVDTQALDASAIAQQKAIKSLFGDDDKEFSEESEIIPTLEPLPSNEVPGHQSVFMNEP
RLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTETGRIGLEGCLCEDFFKIRELLYEQY
AIV
NT seq 2352 nt   +upstreamnt  +downstreamnt
atgacatccatcattaagctaactaccttggccggcgcccaggaagaatctgcagtttgt
tatcttcttcaggttgatgaattccggtttctcttggactgtggctgggatgagaatttt
tccatggatatcattgactctgtcaaaaaatatgtccatcaggtggatgcagtcctctta
tcgcatcctgatccattgcacctgggggctctgccctatgctgttggaaagctggggttg
aactgtgccatatattctactattccagtgtacaagatgggtcagatgtttatgtatgac
ttatatcagtctcgtcacaacactgaggatttcagtcttttctctcttgatgatgttgat
tgtgcattcgataaaatccagcaattaaaatattcccaaattgtgcatttgaaaggaaag
ggtcatggcttgtcaatcactcctttaccagctggtcacatgatagggggtaccatatgg
aaaattgtgaaagatggagaggaagaaattgtgtatgcagtggatttcaatcacaagaga
gagatacatttaaatggatgctccttggaaatgatcagcaggccatctctacttattact
gactgttttaatgctacctatgtccagccaagaagaaagcagagggatgaacaactgcta
acaaatgtcctggaaactctgcgaggagatgggaatgttcttattgctgtagacacagca
ggcagagtccttgaacttgcgcagctgcttgatcagatttggaggaccaaagatgctgga
cttggggtttactctttggctctcctgaataatgtcagctataatgtagtggaattctca
aaatcacaggtggaatggatgagtgataagcttatgaggtgttttgaagacaagagaaac
aacccatttcagtttcgtcacctcaccttgtgtcatggcttttctgaccttgctcgtgtg
ccaagtccaaaagtagttcttgcaagccagcctgatcttgaatgtggattttcaagagaa
ctcttcattcagtggtgtcaggaccccaaaaactctgttatactgacctacagaactact
ccaggaactcttgctcgctttctgattgatcacccgtcagagcgaatcattgacatagag
ctgagaaagcgtgtaaaactggaagggaaggagcttgaagagtacttagaaaaggagaag
ctgaaaaaagaagctgctaaaaaactggagcaatccaaagaggcagacctggattctagt
gatgatagtgatgctgaggaggatatagatcagaccacatcacataaggccaaacatgac
ttgatgatgaaaaatgagggcagcagaaaaggcagcttcttcaaacaggcaaagaagtct
taccctatgtttcctgcaccagaagagaggattaaatgggatgaatatggtgaaattata
aagcctgaggatttcctagtacctgagttgcaagcaacagaggatgaaaagactaagcta
gagtcaggtttgacaaatggagaagagccaatggaccaagacctgtctgatgttccaacc
aaatgtatctcagcaacagaatcaatggaaatcaaggcaagagtcacatatattgattat
gaaggccgctcagatggtgactccatcaaaaagatcataaaccaaatgaagccgagacag
ttgattattgtgcacggccctccagatgcaactcaggatcttgctgaagcttgtagagca
tttggtggcaaagatattaaagtttatacccccaaactacatgaaactgtagatgcaaca
agtgaaacacacatttaccaagtaagactgaaagattccttggttagctcccttaagttc
tgcaaagctaaagatacagagttggcatggattgacggggtactggacatgagagtatca
aaagtagacaccggggtcatattagaagaaggggaattaaaagatgaaggggaagattca
gaaatgcaagtggatactcaagctttggatgccagcgcaatagcacagcaaaaggccatt
aaaagcctgtttggagatgatgacaaagagttttcagaagaaagtgagatcatcccaaca
ttggagccattaccaagcaatgaggtcccaggacaccagtcagttttcatgaatgaacca
cgactgtcagatttcaaacaagtccttttgcgggaagggattcaggctgaatttgttggt
ggtgtgctagtgtgcaacaatatggtagctgtccgaaggacggaaactggtcggattggt
ctagaaggatgcctttgtgaggacttttttaaaataagagaacttttatatgaacaatat
gccatcgtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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