KEGG   Xenopus tropicalis (tropical clawed frog): 100158548
Entry
100158548         CDS       T01011                                 
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
  KO
K20181  vacuolar protein sorting-associated protein 18
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04140  Autophagy - animal
xtr04148  Efferocytosis
xtr05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100158548 (vps18)
   04148 Efferocytosis
    100158548 (vps18)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    100158548 (vps18)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xtr04131]
    100158548 (vps18)
Membrane trafficking [BR:xtr04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    100158548 (vps18)
   Hops complex
    100158548 (vps18)
SSDB
Motif
Pfam: Pep3_Vps18 Clathrin zf-RING_16 zf-RING_2 Vps39_2 zf-RING_11 zf-RING_UBOX Synaptonemal_3 zf-rbx1 Nup54_57_C zf-ANAPC11 zf-RING_5 DUF2175
Other DBs
NCBI-GeneID: 100158548
NCBI-ProteinID: NP_001121454
Xenbase: XB-GENE-1007587
UniProt: B2GUB7
Position
8:115326252..115334263
AA seq 968 aa
MASILEQYENDLSQASLSNQGRSPDIPLSGYVNARLEKEMPIFNKQRIDFTPPENINSLF
VCSNQLCMSLGKDSILRIDLMKADQPNQVDLGRKDDFRVHKIFLDPTGSHLLISVSSSEC
LYLNRNAQKVRTLSRWRGHLVESIGWNKLLGNETSTGPILVGTAQGLIFEAEISASEGGL
FSTNPDQYFRNIHTLEEETGPVPVCCLEINRGYENRFSVIATTPKRLFQFAAKIPEGTEQ
QGFTPLFNQPVDDLPSIQEFPGSLGYSEIAFYTQKLRSIPSSFAWMMGNGVLYGNLDFSR
PDSILTDVQVWEYPSSVEKPMSIVLTQFHFLLLLPDRIKAICILNGQVVFEDVFTEKFGP
LKKMLKDPSIGQIWIHTERAVFRYHVEREPRDVWKMYMSMGKFDLAKEFCRDRPECMDTV
LASEAEHCFQSKKYIESAKCYALTQKYFEEVALKFIEAKQEEALMEYLQKKLSNLKSSEK
IQVTLLTTWLTELYLNHLGILESDTSKRSFYLKARDEFRAFLSSPRNKECLFNNRTSIHD
LLASHGDTEHMVYFAVLMQDYERVVAHHCQHDDYNEALNVLSKHKDEKLFYKFSPVLMQH
IPTKVVDAWIAMGKKLDPKNLIPALVNYSQSAGTQINEAIRYMEYCVYMMKETEQAIHNY
LLSLYAQFRPDSLLSYLEKAGTNANRIHYDLKYALRLCAEHGHNRACVHVYKVMELYEEA
VDLALMVDVDLAKSCADLPVDDEELQKKLWLKIARHVVQEEKDVKKAMVCLSSCHLLKIE
DILPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEDATLSAKRIREDMQEMRNKYGL
VDPQDKCTFCDFPLLNRPFYLFLCGHMFHFDCLMQVVVPNLPSYKQVKLEDLQQKLAAAV
QPPKSRSQAKEEDAINLGKIQQNREQIKADIDDIVAAECAYCGELMIRTIDKPFIDPQKY
KEEMLSWL
NT seq 2907 nt   +upstreamnt  +downstreamnt
atggcctcgatattagagcagtatgagaatgacttgtcccaggctagcctctccaaccag
ggccggagcccggatatcccgctgtctggttatgtaaatgctcgtctagagaaagaaatg
cccatatttaacaagcaaaggattgatttcacccctccggagaatatcaacagcctgttt
gtgtgtagtaaccagctgtgtatgagcttgggaaaagactccattctgagaatagatttg
atgaaagcagaccagcccaatcaagtggacctagggcgtaaagatgatttcagagtccat
aagattttcttggatcccacaggttctcacctcctgatctctgtgagttccagtgaatgt
ctctatcttaatcgaaatgcccagaaagtgagaactctttctcgttggaggggtcacttg
gttgaaagcattggatggaacaagcttttgggcaatgaaacaagcactgggccaatcctt
gttggaactgctcagggtctgatatttgaggcagaaatttctgccagtgaaggtggcctt
tttagcaccaaccctgaccagtacttccgaaacattcacacgctggaggaagagacaggt
cctgtccccgtttgctgtctggaaataaatcgcggttatgaaaataggttttctgttatt
gcaacaactcccaaaaggctattccagtttgctgctaaaatacctgagggaactgaacaa
cagggtttcactcccctttttaaccagcctgtagatgaccttcctagtatccaggagttt
ccaggaagtcttggttatagcgagattgcattttatactcagaagcttcgttccattcca
agttcttttgcttggatgatgggaaatggagtcctttatggtaacttggatttctctcgc
ccagactccatactgacagatgtgcaggtctgggagtatccatccagtgttgagaagccc
atgtctattgtgctcactcagttccattttctgcttctgcttcctgacagaataaaggca
atttgcattcttaacgggcaagtggtttttgaagatgtttttacagaaaagtttgggcca
ttaaaaaagatgttaaaagatcccagtataggtcagatctggattcatacagagagagca
gtgttccgataccatgtggagcgagagccgagagatgtttggaagatgtatatgagcatg
ggcaaatttgacttggccaaggaattctgtagggatcggcctgaatgcatggatactgtg
ctggctagtgaggctgagcactgcttccagagcaagaaatacatagaaagtgccaagtgt
tatgccctcacccaaaaatactttgaagaagtagctctgaaattcattgaagccaaacaa
gaagaagccctcatggagtatctgcagaagaaactgtccaacctgaaatcctctgagaaa
attcaagtcactttgctaacaacatggttgacagagctctatttaaatcacctgggcatt
ctagaaagcgacacctcaaagagaagcttttatttaaaggcccgggatgagttcagggca
ttcctaagcagcccacgaaacaaagaatgcctcttcaacaaccggacttcaatacatgat
ctcttggccagtcatggagatactgagcacatggtgtattttgcagtattaatgcaagat
tatgaaagagtagttgcccatcattgtcagcatgatgattacaacgaagccctcaatgtc
ttatcaaagcacaaagatgagaaactgttttataaattctcccctgtgctgatgcagcac
attcccaccaaggtggtagatgcctggattgcaatgggcaagaagctagaccccaagaac
ctcattcctgctcttgttaattacagtcagagcgcaggcactcagatcaacgaggccata
agatacatggaatattgcgtttatatgatgaaagaaactgaacaagccatccacaactac
ctgctttctctttatgcccagttccgacccgattcactgctttcttacctggaaaaagct
ggaacgaatgctaatcggattcactatgatctgaaatatgcactgcgtctgtgtgcagaa
cacggacataaccgagcctgtgtccatgtgtacaaggttatggagctgtacgaggaggca
gtggatttagctttaatggtggatgtggacctggccaagtcttgtgcagatttaccagtg
gatgatgaggagctgcagaagaagctgtggttgaagattgctcgccatgtggttcaggag
gagaaggatgtgaaaaaagccatggtctgcttgtccagctgccacctcctgaaaattgag
gatatcttaccgttctttcctgattttgtgaccattgaccacttcaaggaggccatttgc
aactcccttgaagactacaacaaacatattgaggagctgaagagggagatggaagatgcc
accctgagtgccaaacggatccgggaggacatgcaagaaatgagaaacaagtatggatta
gtggatccgcaggacaagtgcactttctgtgacttcccactccttaaccgccccttctat
cttttcctatgtggccacatgtttcactttgactgcctcatgcaggtcgttgtccctaac
ctgccgtcttacaaacaggtaaaactggaggacctccaacagaagctggcagctgccgtg
caacctccaaagagccgctctcaggccaaggaggaggacgctataaatcttggcaaaata
cagcaaaaccgcgagcaaataaaggcagatattgatgacattgtggccgccgaatgcgcc
tattgcggtgaactcatgattcgcacaattgacaagcccttcatagatccacagaaatac
aaggaggagatgctttcttggctttag

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