KEGG   Xenopus tropicalis (tropical clawed frog): 100380063
Entry
100380063         CDS       T01011                                 
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
  KO
K10728  topoisomerase (DNA) II binding protein 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100380063 (topbp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xtr03032]
    100380063 (topbp1)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    100380063 (topbp1)
DNA replication proteins [BR:xtr03032]
 Eukaryotic type
  DNA Replication Initiation Factors
   Other initiation factors
    100380063 (topbp1)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     100380063 (topbp1)
SSDB
Motif
Pfam: BRCT PTCB-BRCT TopBP1_BRCT0 BRCT_2 RTT107_BRCT_5 LIG3_BRCT BRCT_3 ECT2_BRCT0
Other DBs
NCBI-GeneID: 100380063
NCBI-ProteinID: XP_002937791
Xenbase: XB-GENE-990637
UniProt: A0A6I8RMS4
Position
6:52587506..52622875
AA seq 1515 aa
MARSENEPFCVKFIKSPENSEYFFKAYEAIKQIQSDESLQLTEESEALLLKEKDKSLYIC
DPFSGAVFNHLKKLGCRIVGPQVVIFCMEHQRRVPRAEYPVYNMAMADVTISCTSLDKET
REDVHNYVQLMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLEKPILLPSWVKALWDQSN
QQIIRYCDVNMKEYLCPIFRGCTICVTGLNSLDRKEVQRLTTLHGGEYTGQLKMNESTHL
IVQEAKGQKYECARKWNVHCVSVQWFFDSLDKGFCQDETMYKIEPATSLKSVPDTSTPTG
DNKKPDSRAIYDVSQISNISTSCVNESAFNSVMTSRLDPPADALENLDISSLQAPEDLLD
GCRIYLCGFGGRKLDKLRRLINSGGGVRFSQLTADVTHIIVGETDEELKQFLSKTQHRPY
VLTVKWLLESFSKGHLQPENIYSHSSYQQTELSSPVQPAFNLTAQKISSTRGPLNHTHNQ
QADEDLLSQYTENNSTLIEDEHPKISNTNSISQMSMHEDMTSCTSQSGLADTSTIIEGGL
FSRKQFLVLGFLEEDEACIIDIIKKNAGKVLSSQKRAIADYAVVPLLGCEVESTVGEVVT
NAWLGMCIEQEKLLDPHSNALFTPVPCLEGSRPLQECVLSVSQFMGAERDSLVYLAGLLG
AKVQEFFVRKANPKKDMFASTHLVLKDAEGSKYEAAKKWNLPAVTMKWLLQCARTGKKAD
EHHYLVDSVPEEDESFISQTYKPQVSRRSMDAPCHQENHPQALKKAAVTPLDMNRFQSKA
FQSVISQHNKNPQTPGGESKVLQREPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETPG
GPNQKSRTQSTPLSEVIGRNLQLAIANSTRQTAAVTASPQLKAAEQKEQLENSKVLHNVV
ICVSKKLIKKQGELNGIAASLGAEYRWCFDESVTHFIYHGRQNDMSREYKSVKERSGICI
VSEHWLLACSEQQKRVPEALYPHTYNPKMSLDISGVQDGSHTASKFSADTSLQLDENCEL
RLQQNDELGETSDDQVKKEADNRDPQNPLKEVKGALTQTLEMRENFQRQLQELMSATSVV
KPQGPRGSLTRVGFDNSPCTPEGARSTRNGRSRVLEALRQSRQATTDLNTEPSQNEQIIW
DDPTAREERAKLVSNLQWPDSPSQYSEQLQLNMTDAGGNYAAVKESLTDTEIAELEACEF
EHKSVTRAPMTENDLQSPNKLDQLTPTPQAPSIAFPLANPPVAPQPKEKPVKPFSEEKTI
KERRFQLSSLDPQERIDYSQLIEEIGGVVIEKQCFDPSCTHIIVGHPLRNEKYLASMAAG
KWVLHRSYLEACRAAKQFIQEDDYEWGSKSILSAVTNINPQQRMLAEAAMRWRKKLQGIK
QNMGIAEGAFSGWKVILNVDQTKEPGFKRLLQSGGAKVFAGHSSALFKEANHLFADFSKL
KPDEPKVNVAEAAAQGVNCLKPEYIADYLMKEPPPPVNNYCLPDALPYLQITVTGLSRKR
KNSGDISDVKRSRLY
NT seq 4548 nt   +upstreamnt  +downstreamnt
atggctaggagtgaaaatgagccattttgtgtgaaatttatcaagtctcctgaaaattct
gaatacttctttaaagcttatgaggcaatcaagcagattcagtctgatgaatctcttcag
ctaactgaagaaagtgaggcacttctcttgaaagaaaaagacaaatctctctacatttgt
gatccttttagtggtgctgtctttaaccatctgaaaaagcttggctgtaggatagttggg
ccacaagttgtcattttttgtatggagcatcaaagacgtgtccctcgtgctgaatatcct
gtctataatatggcaatggctgatgtgacaatttcctgtaccagtctcgataaagaaact
agggaagatgtgcataattatgtacaactcatgggaggctgtgtatacagggatcttaat
gtttctgttacacacctaattgctggtgaagtgggcagtaaaaaatacctggtggctgca
agcctagagaagcccattcttcttccgtcttgggtgaaagcattatgggatcaatcaaat
cagcagattattcgatactgtgatgtaaacatgaaagaatatttgtgcccaatatttcgt
ggttgcactatctgtgtcacaggattaaacagtttagacagaaaggaggtgcaacgtctt
acaaccctccatggaggagagtacacagggcaactcaaaatgaatgaatctacacacctt
attgtacaagaggctaaaggccagaaatatgagtgtgccagaaagtggaatgtacactgt
gtctccgttcaatggttcttcgacagtctggacaaaggattctgtcaggatgaaacaatg
tataaaattgagcctgctactagtttaaaatctgtgccagatacatccactcctacaggt
gacaataagaaaccagatagtcgggccatttatgatgtcagccaaatttcaaatataagt
acaagctgcgttaacgaatcggcttttaattctgtgatgaccagcagactggatcctcca
gcagatgcccttgagaacttggatatcagttcattacaagctccagaagaccttcttgat
ggctgccgaatatatttgtgcgggtttgggggaagaaagttggacaagttgagaaggcta
atcaacagtggtgggggtgtgcgatttagtcagcttaccgcagatgtaacccatattatt
gttggagaaactgatgaagaactaaagcagtttttgagcaaaactcaacacaggccttat
gtgttaactgtaaaatggctactggaaagcttttcaaaaggacatctgcaacctgagaac
atatattcccattcaagctatcaacaaactgagctttcttcaccagttcagcctgccttt
aatttaactgctcaaaagatcagtagtacacgagggcctctaaaccacactcacaaccaa
caggcagatgaggacctgctgtctcagtacacagaaaataactccactttaattgaggac
gaacatcctaaaatctctaataccaacagtatttctcaaatgagcatgcatgaagatatg
acatcttgtaccagccaaagtggtttggcggatacatccaccataattgaaggaggctta
ttcagccgtaaacaattcttggtgctgggctttttggaggaagatgaggcatgcatcata
gacataataaaaaagaatgctggcaaggtgctttcatctcagaaaagagccattgctgat
tatgctgtagttcccttactgggttgtgaggtggaatctacagttggagaggttgtgacc
aatgcttggctgggcatgtgtatagaacaagagaagctcctagacccacattcaaatgca
ctttttacacctgtgccatgtttggaaggtagtcgaccgctgcaagagtgcgtgctttct
gtcagccagtttatgggcgctgaaagggattcattagtttacttggccggtttgcttgga
gcaaaagttcaagagttttttgtgcggaaggccaatccaaaaaaagacatgtttgccagt
acacacttagttcttaaagatgctgaagggtcaaaatacgaagcagccaaaaagtggaat
ttgccagcagtgacaatgaagtggcttttgcagtgtgctagaactggtaaaaaagcagat
gaacaccattatcttgttgacagtgttcctgaagaagatgagagttttataagtcagaca
tacaaaccacaagtatccaggcgatcaatggatgcaccatgccatcaagaaaaccatcca
caagccctaaagaaagctgcagttactccacttgacatgaaccggtttcagagcaaagca
tttcagtctgttatttctcagcataacaagaacccacaaacacctggaggggaaagcaaa
gttcttcagagagaaccatctttgcatcttgacacaccatcaaaatttctttccaaagac
aaacttttcaaaccctcctttgatgttaaggatgctcttgcagctctggaaacacccgga
ggtcccaaccaaaaaagcaggacacagagcactcccctgtctgaagttattggtaggaat
ttgcagctggctattgcaaacagcacacgtcaaactgctgcggtcactgcaagccctcag
ctaaaggcagcagaacaaaaagagcagttagagaactccaaggtactgcataatgttgtt
atatgtgtgagcaagaagctaattaaaaaacaaggtgaactgaatggcattgctgcttca
cttggagcagaatacagatggtgcttcgatgaaagcgtgacccattttatctaccacgga
cgacaaaacgacatgagtcgagaatacaaatctgtgaaagaacgaagtggcatctgcata
gtttctgaacactggctattagcttgttcagaacaacagaagagagtacctgaggctctc
tatccccatacctacaatcctaaaatgagcttggatatcagtggtgtacaagatggatct
cacacagccagcaaattctcagcagacacctctcttcagctggatgagaattgtgaatta
aggcttcagcagaatgatgaacttggggagacatccgatgaccaggttaaaaaggaagct
gataatagagatcctcaaaaccctttaaaagaagtgaaaggagctttaactcagacttta
gagatgagagaaaatttccagcggcagctacaagaattaatgtctgcaacttcagtggta
aagcctcaagggccccggggctccttgactagagttggctttgataattctccttgtaca
cctgaaggggcacgttctacacgtaatggaagaagtagagttttggaagcactaagacag
tctcggcaggctacaacagacctcaatacagagccatcacagaacgagcaaataatttgg
gatgatcctactgccagagaagaaagagcaaagctggtcagcaatctacagtggcccgac
agtccctcccagtattcagaacagcttcagcttaatatgactgatgctggtggaaattat
gcagcagtaaaggaatctttaacagatactgaaatagcagaattggaagcttgtgaattt
gagcataaatcagtcactagagctcctatgacagagaatgatttgcagtctccaaacaaa
ctggatcaactcactcctaccccacaagctccaagcattgcatttccacttgccaaccct
ccagtggcaccacaacctaaagaaaagcctgtgaaaccattttcagaggagaaaaccata
aaggagcgtcgcttccagctatcatccttggaccctcaagaacgaattgattactcacag
cttattgaggaaatagggggggtggtgatagaaaaacagtgttttgatccaagctgcaca
catatcattgtggggcatcctcttcggaatgagaaatatttggcctcaatggctgcagga
aagtgggtactacaccggtcatatctggaagcctgcagagctgcaaaacaattcatacag
gaggatgactatgaatggggaagcaagtctatactgagtgctgtgaccaacataaatccc
cagcagaggatgctggcagaggctgcaatgagatggaggaaaaagctgcaaggaataaag
caaaatatgggcattgctgagggtgcattcagcggctggaaagtcattttaaatgttgac
caaacaaaggaacctggtttcaaacgtttgcttcagtcaggaggtgcaaaggtatttgct
ggccattcttctgctctgtttaaagaagccaaccacctctttgctgacttcagcaaactg
aaacctgatgagcccaaggtgaatgtggccgaggctgcagcacaaggagtaaactgccta
aagccagagtatattgccgactacctcatgaaggagcctcctccaccagtcaacaattac
tgcctccctgatgctctgccatatcttcagatcacagtgactgggctttctcgcaaaagg
aaaaactctggagacatctctgatgttaagagatcacggctttactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system