KEGG   Xenopus tropicalis (tropical clawed frog): 100485449
Entry
100485449         CDS       T01011                                 
Symbol
runx1
Name
(RefSeq) runt-related transcription factor 1 isoform X1
  KO
K08367  runt-related transcription factor 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04530  Tight junction
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    100485449 (runx1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xtr03000]
    100485449 (runx1)
Transcription factors [BR:xtr03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   Runt
    100485449 (runx1)
SSDB
Motif
Pfam: Runt RunxI DUF3037
Other DBs
NCBI-GeneID: 100485449
NCBI-ProteinID: XP_012813452
Xenbase: XB-GENE-483164
UniProt: A0A6I8SXC6
Position
2:13899709..13971838
AA seq 500 aa
MRIPVDTSTSRRFTPPSTTLSPGKMSEPIPLNVTDSSAALVGKLRSTDRNMVEVLSDHPG
ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA
TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRPK
YDPIIGPGLVGGQIQAEIYSIYSLGKSADSSCVGSFTGHRQKLDEQTKSGTLSFSERLSE
LEHLRRTAMRVSPHHPTPTPNPRATLNHSTAFNPQPQSQIQDTRQVQASPPWSYDQSYQY
LGSIATQSVHPATPISPGRASSMTSLSAELSSRLSGASDLTAFSDPRVGIDRQFSTLPSI
SDPRMHYPGAFTYTPTPVTSGIGIGMSAMTSATRYHTYLPPPYPGSSQAQSSPFQTSSPS
YHLYYGTSAGSYHQFSMMSGGDRSPPRILPPCTNASTGSTLLNPNLPNQNDVVEAEGSHS
NSPTNMGTTPRLEEAVWRPY
NT seq 1503 nt   +upstreamnt  +downstreamnt
atgcgtatccccgtagataccagcaccagccgccgcttcacgccgccctccaccactctg
agtccggggaagatgagcgaacccatcccgctaaatgtcacggacagcagcgccgccctg
gtgggcaagctgagaagcacagaccggaatatggtagaagtactgtccgatcatcccggg
gagctggtccgcacagacagcccaaactttctctgctcggtgctgcccacacactggagg
tgcaacaagaccttgcccatcgctttcaaggtggtggccttgggagacgttcctgatggg
acactggtgacagtgatggctggcaatgatgagaactattccgctgaactaaggaatgcc
acagcagccatgaagaatcaagtggcccgcttcaatgacttgcgatttgtcggaagatct
ggaagaggaaaaagcttcaccctgactatcaccgtcttcaccaatcccccgcaggtcgct
acctaccatcgtgccattaagatcactgtggatggacctcgagagccaagacgcccgaag
tatgatccgattattggcccagggctcgtgggtggccaaattcaagcagaaatctattca
atttacagtcttggcaaatctgcagattcaagctgcgtgggcagctttacaggacatcgt
cagaaactagatgagcagacaaagtcgggcaccttgtccttttctgaacgactcagtgaa
ctggaacatttgcgccgaacagcaatgagggtcagcccacatcacccaactcccacacct
aacccacgtgccaccctaaatcattccacggctttcaaccctcagccacagagtcagata
caagatacaagacaagtccaggcgtctcctccttggtcgtatgaccagtcctaccagtac
ctgggatccatagcaactcagtctgtacaccctgctacccccatatcgccaggaagggca
agcagtatgacgtctctcagcgccgaactctccagccgactctcaggagcctcagacctt
actgctttcagtgatcctcgagtcggcattgaccgtcagttctccactcttccatccatc
tcggacccccgtatgcactacccaggggcttttacctacactccaaccccggtcacttca
ggtataggaatcggtatgtcagccatgacctccgccaccaggtatcacacctacctaccc
cctccatatcctggatcatcccaggcacaaagcagcccatttcagaccagttccccatcc
taccatctctattacggaacatcggccggatcctaccaccagttctcgatgatgtcggga
ggagaccgatccccgcctcgcatcctcccaccttgcacaaacgcttccacggggtccact
ctcttgaaccctaaccttccaaaccaaaacgatgttgtggaggctgaaggaagccatagc
aactctcctaccaacatgggaaccaccccaaggcttgaggaagctgtatggcggccatat
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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