KEGG   Xenopus tropicalis (tropical clawed frog): 100486430
Entry
100486430         CDS       T01011                                 
Symbol
siglec1
Name
(RefSeq) sialoadhesin
  KO
K06548  sialoadhesin
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04514  Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    100486430 (siglec1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:xtr04090]
    100486430 (siglec1)
   04091 Lectins [BR:xtr04091]
    100486430 (siglec1)
CD molecules [BR:xtr04090]
 Proteins
  100486430 (siglec1)
Lectins [BR:xtr04091]
 I-type lectins (Siglecs)
  100486430 (siglec1)
SSDB
Motif
Pfam: Ig_3 Ig_2 I-set ig V-set Ig_4 Ig_5 Izumo-Ig C1-set Ig_6 C2-set_2
Other DBs
NCBI-GeneID: 100486430
NCBI-ProteinID: XP_002938446
Xenbase: XB-GENE-492918
UniProt: F6SXX7
Position
1:14261041..14289599
AA seq 1670 aa
MLLLILLISWNGRGAYSSWDVFVPDSIQGVVGSCLLIPCSFTYPSNVQTPDGIAPIWYKD
RDLKVVYHPTETIEAGFQGRMELLGNPNLNNCTTLLRNLQSSDTGEYFFRFEISNVNRWT
GKKAVTVTVNSRPEMPNAVIPRSIREGESVTFQCTTQYYCPNGSGTLEWHGYHPDRSFLA
RSLQTDTSAVQMGQNLTTSFTWLYHQKQLQCEVSVGDQKETKEVLLVVNHAPKGVKILMA
PSRDNIKQGDSVALTCQYNSSYPAVSGYTWYRNNKVFSREPIVSFPSITRQDFGDFRCEV
QNPEGTGTSEVSRLIVFSANTLVSPSSEVREGEAVTLTCDVPGADPDQIHYSWYKNSLWI
KDGATRSLILYEAAASDAGYYSCKVQNDKGSDSSPPVILHVLYPPRIPKFNSFLETQEGK
LSIIHCSVDSNPPSVLTLYKNGQVLATTNSHGAPTQRLNVISSRNSLKLEIREVVMSDAG
AYSCVATNAIGNSTACLRLTVEIARLVISPSSEIEEGKEVTLTCFATRSSEKGIKYTWYR
NGKWLKETEEDTVTFPRVSSRDAGSYYCLAQSSQGSSSSPPRTLHVFFAPRDLSVSSFVG
SSGRNLGIILCTVDSDPHSELFLYRKETLVASSTMLLHNRRYNISTSPNSLKLEIQDVFL
EDEGAYRCIANNTYGHMMGSLDFTMETAKISVIPTSEVHEAEAVNLTCILNSVSKGNFIY
TWYKNSVLYSEGPEPFLMFQRVSSSDSGSYYCRAWNNATSKSSSSCRLHVFYEPRSMQLK
SYLDTEVGKSAFILCTVDSYPPAQMLLYYQDELVISKKNLSNVNQRYRVSFSSNALRVDI
QDVKLEDEGKYTCTSVNSVGSTNKTIYFKVQLARILVTPSPEVKENEKVVLTCDLTKTQL
EGTMYIWYKNSQRLRESSENTLVFDAVKSNDSGYYHCKAHSSQDSTISPSVSLHVSYAPR
VPNMTSFWESHSGQVGIIECNVDSDPLSSLSLYRGKLLVGLTASSQTLNQRMTVSSSQNS
LKLVIRDVVLEDEGEYVCTASNSIGHSTSAINFTAQTSRILISPSSQVQEGMTVNLTCLV
ASNAPGEVEYSWFQNGKEHPRGSSKTLLFGRVSSEDGGLYYCTVRSDKVTKASPTINLNV
TYAPRNAYIKSFVETQNGEVAIIQCGVDSNPPSQLLLLKEHQVVASLGDSGLHHQRFNPY
FSPNTLRLEIKDLMPTDEGTYIFTAKNVHGTKSVSSHLAVEVARILVNPSPKLNEGQSAT
LTCNVLSTPQPVTSYTWYKNGRWFQEGFPGSLAFEKVLSADAGTYACTGHTANGTWPSLP
ITLYVQYPPRNLSLSSFLEAQGKRQGVISCRVESDPPSQLVLYKGGQVAASFVPQSTNKR
VRLSSSHNALRLEMEEVAPEDQGEYTCQATNSLGAAQTSVHFSLQEAKVVVTPSAKLQEG
GSATLTCQTVSTVAQNASFTWYKNNQWLKDGAEASLLLLKVSDADAGSYHCLAKYGGQES
ISPLVAVTVLYAPKNLLVTSFLEPHGKDQGIILCKLDSVPPSVITLHREGTVLASTMPAQ
PDQGQKFWSFSSHNYLRLEIRDVTAEDSGRYVCTANNTIGSTTSSVLFTINDKEVLVYKV
TVGVTLLCVVLLLAAIIVMWQRKRIRYTMQTDKNSIEMDNNGTTKEELLS
NT seq 5013 nt   +upstreamnt  +downstreamnt
atgttgctgttaattctactcatctcatggaacggccgaggcgcctactccagctgggat
gtatttgtcccagattccatacaaggagtggtgggttcctgcctgctaataccctgctca
ttcacctaccccagcaatgttcagactcctgacggaattgccccaatatggtacaaggac
agggacttgaaagttgtctaccatcctacggagaccatagaagccggatttcaggggcgc
atggaattgctgggaaaccccaacctgaacaactgtaccaccctcctgagaaacctacag
agtagtgatacgggggagtatttttttaggtttgaaattagtaatgtgaatagatggaca
ggcaagaaagccgtcactgttactgtcaatagcagaccagaaatgcccaacgctgtgatc
cctcggtctataagagaaggggaatctgttacgttccagtgcacgacacagtactactgc
ccaaacgggtcgggcacactggagtggcatgggtaccacccagacagatctttcttggca
cggagcctacagacggacacatctgccgttcagatgggacaaaacctgaccacgagtttc
acttggctgtatcaccagaagcagcttcagtgcgaggtgtcagtcggggatcagaaggaa
accaaggaagttctcctcgttgtcaatcatgcccccaaaggggtaaagatcctcatggcg
ccatcgagagacaacattaagcagggggactcggtggcgctgacgtgccagtacaacagc
tcttacccagcagtgagtggctacacgtggtacaggaacaacaaggtgttttccagggag
ccaatcgtctctttccctagcatcaccagacaggattttggggactttcggtgtgaagtg
cagaacccagagggaactgggacctcggaggtcagccggctaattgtgttctcggcaaac
accttggtgagtccatcgtcggaggtgagagagggcgaggcagtgaccctgacgtgtgac
gttcccggtgctgacccagatcagatccactacagttggtataagaacagtctctggatt
aaggatggagccacgcgctccctgatactctatgaggctgcagcctccgacgcgggatac
tacagctgcaaagtacagaacgacaagggcagcgattcttctccacctgttattttacat
gtcctgtatcctcccagaatcccaaaattcaactcatttttggaaacgcaggaagggaaa
ctgagcatcatacactgctctgtggatagcaacccgccctctgtgctgactctctacaag
aatggccaagtattggccaccaccaactcccacggcgcccccacccagaggctcaatgtc
atctcgtcacgcaactccctgaaactggagatccgtgaagtggtcatgtcggacgcagga
gcgtacagctgcgtggctacaaacgccatcgggaactcaacggcgtgtcttcggctcact
gtggaaattgcccggttggtgatatcgccatcgtcggaaatagaagaggggaaagaggtc
accctcacctgttttgcaacccgcagctctgagaagggaataaaatatacatggtacagg
aacggcaagtggctgaaggagacagaggaggacactgtcacctttccgagagtgtccagt
cgggacgcgggttcttattactgcctggcccagagcagccaaggaagcagcagctcccca
cccaggaccctgcacgtgttctttgcaccaagagatctctctgtgagctcctttgtggga
tcatcgggcagaaatctaggaatcatcctgtgtacggtggacagtgacccacactctgag
ctgttcctctataggaaggagaccttggtggcttccagcacaatgctacttcacaatagg
agatacaatatttcaacttctcccaattccttgaagctggagatccaagatgtgtttctt
gaagatgaaggagcatatcgatgtattgctaataacacttatggtcatatgatgggttcc
ttagacttcaccatggaaacggcaaagatttccgtcattccaacgtctgaggtccatgag
gcggaggctgttaatttaacatgcattctaaacagtgtttcaaaagggaatttcatatat
acctggtataagaacagtgttctgtactctgaagggcccgagcctttcctaatgtttcaa
agggtcagcagttcagattcaggatcctactactgtcgagcctggaataatgcaaccagc
aagagctcatcctcctgcagactccatgttttttatgaaccaaggagcatgcagctcaaa
tcctacctggacacagaggtaggcaaatcagccttcatcctctgcaccgtggatagttac
cccccagcgcagatgttgctctattaccaagatgaactggtgatttccaagaagaacctg
agtaatgtcaatcagcgctacagagtgtccttctccagcaacgccctacgggtggatatc
caagatgtcaagctggaagatgaggggaaatacacctgcacctctgttaattctgttgga
tcaacaaacaagaccatttattttaaagtgcagttggctcggattctagttacaccatct
ccagaggttaaggagaatgagaaggtggtgctcacctgtgacctgaccaagacccaactg
gaaggaacaatgtacatttggtataagaacagtcagaggctccgggaatcatctgaaaac
accttggtgtttgatgcagtaaagagcaatgattcgggctattaccactgcaaagctcac
agctcccaggacagtaccatttctccctctgtgtctctccacgtgtcttatgcccccagg
gttccaaacatgacctcattctgggaatctcacagtggccaggttggcatcatcgaatgc
aacgtggatagtgaccctctgtccagcttatccctttacaggggaaagctgttggttggt
ttaacagcttcttctcaaacgctcaaccagagaatgaccgtatcttcttctcagaactcc
ctgaaactcgtgattagggatgttgtgttggaggatgaaggggagtatgtctgcacagcc
agtaattccattggccattctacatctgccataaatttcacagcacaaacatctcgaatc
ctgatcagtccatcgtcccaagtacaggaaggcatgactgtgaatctgacatgtctggtc
gccagcaatgctcccggggaggtcgaatacagttggttccaaaatggaaaggagcaccca
aggggtagtagcaagactcttctctttggcagggtctccagtgaggatggagggttgtac
tactgcacagtacggagtgacaaagtaacaaaagcctcaccaacaatcaatttgaacgtt
acatatgccccaagaaatgcctacatcaaatcatttgtggagacccaaaatggagaagtg
gccattattcagtgtggggttgacagtaatcctccatcccaattgcttttattgaaagag
caccaggtggtggcttccttgggtgacagcggcctccaccatcaaaggtttaacccttac
ttttccccaaacacattgcgattggagatcaaagaccttatgccaactgatgaaggaacc
tacatctttacagcaaagaatgtccacggcacaaaatcggtgtcctctcatctggctgta
gaagtggctcgtattttggtcaacccatccccaaagctgaacgagggtcagtcggccacc
ttgacctgtaatgtcctgagtacgcctcaaccggtgaccagttatacctggtataagaac
ggcagatggttccaagaaggttttccagggtctcttgcatttgaaaaagtgctcagtgcc
gatgcaggtacctacgcctgtactggccacaccgccaatggcacgtggccctccttacct
atcacgctatacgtgcagtaccccccgcggaacctgtccctctcgtcctttttggaagcg
cagggcaagcgccagggggtaatatcctgcagggtggaaagtgaccctccctcccagctg
gttttatacaaggggggtcaagtggccgcttccttcgtcccccaaagcacaaacaaacgt
gtgagattgtcctcatcccataatgccctgcggctggagatggaggaggtggccccagaa
gaccagggagagtatacctgccaggcaactaactccttgggggccgcacagacctccgtt
cacttctcgctgcaagaagccaaagtggtggtgacgccgtcggccaagctgcaggaaggt
ggatcggccactctcacttgtcagactgtcagcacagtggcccagaatgccagctttacc
tggtataaaaataaccaatggctgaaggacggtgccgaggcatctctgctgctgctgaaa
gtatccgatgccgacgctgggtcgtaccattgccttgccaagtacgggggccaggaaagt
atctccccgctggttgcagtcactgtactctatgctcccaagaacctgctggttacatca
ttcctggaacctcatgggaaggatcaggggattattctgtgcaagttggatagtgtcccc
ccctctgttatcactctgcatagagagggcaccgtcctggccagcaccatgccggcccag
cctgatcaaggtcagaaattctggtcattttcctctcacaactacttgagattggaaata
agagatgtcaccgctgaggattctgggagatacgtctgcactgccaacaatacaatagga
agtactacaagttctgttttatttaccataaatgataaggaggttcttgtgtataaagtc
actgttggcgttacgctcctatgtgttgtcctcctattggccgccatcattgtcatgtgg
cagaggaaaagaatccgatacacaatgcaaacagacaagaactctatagagatggataac
aatggaacaacaaaggaggagctgttatcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

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