KEGG   Xenopus tropicalis (tropical clawed frog): 100487601
Entry
100487601         CDS       T01011                                 
Symbol
shh
Name
(RefSeq) sonic hedgehog protein
  KO
K11988  sonic hedgehog
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04340  Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04340 Hedgehog signaling pathway
    100487601 (shh)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:xtr01002]
    100487601 (shh)
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xtr00536]
    100487601 (shh)
Peptidases and inhibitors [BR:xtr01002]
 Cysteine peptidases
  Family C46: hedgehog family
   100487601 (shh)
Glycosaminoglycan binding proteins [BR:xtr00536]
 Heparan sulfate / Heparin
  Morphogens
   100487601 (shh)
SSDB
Motif
Pfam: HH_signal Hint Peptidase_M15_3 Intein_splicing Ribosomal_S6e
Other DBs
NCBI-GeneID: 100487601
NCBI-ProteinID: XP_031759766
Xenbase: XB-GENE-488039
UniProt: A0A803JKD3
Position
6:complement(17002882..17023309)
AA seq 416 aa
MLVVTRILLLGFICTLVAPPGLACGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRNSDRFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYFESKAH
IHCSVKAENSVAAKSGGCFPGSARVMVEPGGTKAVRELRPGDRVLSSDPQGNLIYSDFLL
FIDKEHDVKKLYYVIQTSQTRIRMTAAHLLFVAQSNGTGSFKSVFASNVRPGDVIYSADR
RDMTLREAMVEKVDLEEDIGAFAPVTAQGTVVIDEVLASCYAVIEEHRWAHLAFAPLRSA
ISLSSYLFPRDSSPSLESYEQVEGIHWYSRLLYHLGTWLLDSKSLHPLGMAATKSS
NT seq 1251 nt   +upstreamnt  +downstreamnt
atgctggttgtgactcgaattctgctgctgggcttcatctgtactctggtggccccccct
gggctggcatgtggacctggcagaggcattggcaaaaggaggcaccctaaaaaactcacc
cctttagcctacaagcagttcatccccaacgtggctgagaagaccctgggggccagtggt
cgatacgaaggaaagattacaaggaactcggatcgatttaaagagttaacccccaattat
aaccctgatattatttttaaagacgaggagaacaccggagcagaccgactcatgactcag
agatgtaaggacaagctgaacgccttggcgatctcagtgatgaaccagtggccgggggtg
aagctgcgggtcacggagggttgggatgaggatgggcaccactcggaggagtcgctgcat
tacgaggggagagcagtggacattaccacgtcggaccgggaccgcagtaaatacgggatg
ctggccaggctggcggtggaagccgggttcgactgggtctattttgagtccaaggctcac
atccactgctcggtcaaagcagagaactcggtggcggccaagtcgggggggtgcttcccg
ggcagtgccagggtgatggtggaaccgggcggcaccaaagcggtgagagagctgcgcccc
ggggaccgggtcctctcctccgacccccaagggaatctcatctacagcgatttcctcctg
ttcatagacaaggagcatgacgtcaagaagctctattacgtcatccagacgtctcagacc
cgaatccggatgacggcggcccacctgcttttcgtggcccagagcaacggaaccgggtct
ttcaagtctgtgtttgccagcaacgtccgacctggggatgtcatttatagcgcagatcgg
agggatatgaccttgagggaggcgatggtggagaaggttgaccttgaggaggacattggg
gcttttgcccccgtaactgcccaggggactgtggttatagacgaggtgttggcctcctgc
tatgcagtcattgaggagcataggtgggcacacctggcattcgccccactgaggtcggcc
attagcctttcatcctatcttttccccagagactccagtccttcgcttgaatcgtacgag
caagttgaaggcattcactggtactcccgactactttatcacctagggacttggctattg
gacagtaagtccctgcaccccctgggcatggcggcaacgaaatccagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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