KEGG T01011: 100488633

Xenopus tropicalis (tropical clawed frog): 100488633

Entry

100488633         CDS       T01011

Symbol

col19a1

Name

(RefSeq) collagen alpha-1(XIX) chain isoform X1

K24340

collagen type XIX alpha

Organism

xtr Xenopus tropicalis (tropical clawed frog)

Brite

KEGG Orthology (KO) [BR:xtr00001]
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xtr00536]
    100488633 (col19a1)
Glycosaminoglycan binding proteins [BR:xtr00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   100488633 (col19a1)

SSDB

Motif

Pfam:

Collagen

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Xenbase:

UniProt:

Position

5:complement(93341764..93709721)

AA seq 1128 aa
MDYIILWMVYFGMKILFPVSSSMALSNRTVCPILRTDGVETRQIYKQDVDMSGYDLAERF
SLRQISCGSEHTCFKLGSTPLIKETIQLFPNGIPDEYSFVATFRVRRTTKKERWYLWQTM
SRFGNPQDSILIDGNKKVVEFTTKHNGVITLQYTFKSRELHHLFDRQWHKLGLSIESKII
SLYIDCKLIERRQTDRKDGIDMQGSSVITTRASDGKPADIELQRITIYCSPKRAAQENCC
EVSDGMCPSQESLQTTASAIVSEKINSLQSTDVVAKDQCPCLPYKGDPGLPGVAGLPGQK
GEKGLQGENGTKGDIGIPGQIGEKGEEGTSGSTGLKGEPGHNGSKGEKGEMGEKGNQGEI
GPFGLPGNDGSDGRPGIQGPIGPKGEKGEVGPPGPAVLPIVAGGIKGDKGPEGPQGPPGN
EGQRGRRGKPGPPGNPGPLGPPGVPGESGPSGKKGDKGDVGQRGLPGLPGLVGSVSKGEK
GEPGGTDNKGEQGVKGETGNPGLPGMTGLPGIQGQKGEPGAIGQPGEMGLRGEHGIPGKQ
GVKGDKGEPGGVEGPIGPPGPKGDTGPPGAGLQGEPGPSGTSGAPGPRGPKGERGLPGVQ
GLPGEAGPPGTGVEGPQGPRGPPGEPGIQGPRGLPGVPGLPGAEGVPGRDGRPGLPGPPG
DPIALPLLGDIGAVLKNVCSHCPIGGPGNTGIKGEKGDEGIIGQHGVKGDPGPRGPSGVP
GKEGPKGIKGERGFPGLSGEKGDQGMQGIPGLPGLIGPPGPSGHLGRPGHPGPAGSKGEK
GNEGSPGVPGPPGPPGIPVPERNGMGSLYKIQGAASAVYMGPPGPPGPKGDQGPMGEAGP
MGLPGLEGLPGEKGERGQIGPPGIAGIPGRNGAPGPPGYPGESGERGPVGDIGFPGPEGP
AGVPGKNGNDGLPGSVGAPGRPGDRGPKGERGDPGIPGDQGPQGERGKPGPSGYKGDMGT
VGPQGPPGDRGYQGHPGKDGQPGPPGRPGISTENILFEEMKKYIKQEVLRIFEERMAELL
SQLKSPAALLAAQGHGKPGPPGNDGLPGPPGDPGPPGQQGLRGQKGERGEFGIGLPGSPG
PAGPTGMPGSPGTPGPSGPSGPPGIGGRCNPVDCYYPLSHGRSRLNGK

NT seq 3387 nt +upstreamnt +downstreamnt
atggattatataattctttggatggtttactttggaatgaaaatcctgttccctgtttct
tcatcgatggcactgtcaaaccgaacagtatgtccaattttaaggactgatggagttgaa
actagacaaatttacaagcaagatgttgatatgtcaggctatgaccttgctgaacgtttt
tctcttagacagatatcatgcggcagtgagcatacatgttttaagcttggaagtacgccg
cttattaaagagacaatacaactttttccaaatggaattcctgatgaatattcttttgta
gccacattccgtgtaaggcgcactactaaaaaggagcgatggtatttgtggcaaacaatg
tcccgctttggcaatccccaggattccattctaattgatggtaacaagaaagtagtggag
tttacaactaagcataatggagtaatcactttacagtacacatttaaaagccgggagctt
catcatctctttgatcgtcaatggcacaaacttggacttagcatagagtccaagattatt
tctctttatatcgactgcaagctaattgaaagaagacagactgatcgtaaggacggtata
gacatgcaaggcagttcagttattacaacgcgtgcctctgatggcaaacctgctgatatt
gaactccagcgaataacaatttactgcagcccaaagcgtgcagctcaggaaaactgctgt
gaggtatctgatggaatgtgtccgtctcaggaaagccttcaaaccactgcttcagcaatt
gtatctgagaagataaattcccttcagtcgacagatgtagttgccaaagatcagtgcccc
tgcttgccatataagggggatcctggtttgccaggagtcgcaggcctaccagggcagaaa
ggagaaaagggactccagggtgagaatggaactaaaggggatattggtattcctggacag
attggcgaaaagggagaagaaggtacaagtggatccactggactaaagggagaacctggt
cacaatggaagcaaaggagaaaaaggagaaatgggtgaaaagggaaaccaaggagaaatt
ggaccctttggactacctgggaatgatggctcggatggcagaccaggcattcaaggtcca
attggccccaagggagaaaagggcgaagttggaccaccggggccagctgtattacctatt
gtagctggtggtataaaaggagataagggtccagaaggtcctcaaggtcctccagggaat
gaaggtcagaggggaaggagaggaaaacctgggccccctggcaatcctggaccattggga
ccacctggtgtgcctggagagagcggacccagtggcaagaaaggggacaagggggatgtt
ggtcaaagaggattgcccggcctgccaggactggttgggtctgtttcaaaaggggaaaag
ggagaaccagggggaactgataacaaaggagagcaaggtgttaagggagaaactggaaat
ccaggattaccagggatgactggcctcccaggaatacagggtcaaaaaggggaacctggt
gcaattggacaaccaggggaaatggggttacgaggagaacatggcattcctgggaagcag
ggcgttaagggtgataagggagagcctggtggtgttgaaggacctattggtcctccaggc
ccaaaaggtgatacaggaccaccaggagccggtttacaaggtgagccgggaccaagtgga
acctctggtgcacctggcccaaggggccctaagggagaaagagggttgccaggtgtacaa
ggattgcctggagaagctggaccacctgggactggtgtagaaggccctcaaggaccaaga
ggtccaccaggagaaccgggtatccagggtccgcgaggtcttccaggagtgccaggactt
ccgggtgcagagggtgtccccggcagagacggaaggccaggattgccagggcctccaggt
gacccaattgcacttccacttcttggtgacattggagcagtactaaagaatgtttgtagc
cactgtccaattgggggcccaggtaatacaggaattaaaggcgagaagggagatgaaggg
attatcggtcagcatggagttaagggtgatcctggtcccaggggcccttcaggagtacct
ggtaaagaaggaccaaagggaatcaaaggtgaacgtggattccctggactctctggagaa
aaaggcgatcagggaatgcaaggtattcctggacttcctggcttgataggacctcccgga
ccttcagggcatttggggagacccggacatccagggccagccggctccaaaggtgaaaag
ggaaatgagggttctcctggcgttcctggacctcctgggcctcctggcatacctgttcct
gaaagaaatgggatgggaagtctctataagatacagggggctgcatctgctgtctatatg
ggaccacctggtccacctggtcctaaaggtgaccaaggtcccatgggagaagcaggccct
atgggattaccaggcttggaagggctcccaggagaaaagggagaaagaggacaaattggc
ccaccaggaattgctggcataccagggagaaatggagcaccaggtcctccaggatatccg
ggtgaatcaggcgaaagaggtccagtgggagatattggttttccagggcctgaaggtcct
gctggcgtaccaggaaagaacggaaatgatggattaccaggttcagtgggagcccccgga
cggccaggagacagaggcccaaaaggcgaacgtggtgacccaggtataccgggtgatcaa
ggtccacaaggagaaagaggaaaaccggggccatctggctataagggagatatgggaact
gtgggaccacaaggacctcctggagacagaggataccagggacatccaggaaaggatggg
caacctggaccacctggtcgaccgggaatttcaactgagaacattttatttgaagaaatg
aaaaaatatattaaacaagaagttttaagaatatttgaagaaagaatggctgagttgcta
tcccaactcaagtcaccagctgccttacttgctgctcaaggccatggcaaaccaggtcca
ccaggaaatgatggactgccaggaccacctggagatcctgggcccccaggccaacaagga
ttaagagggcagaaaggtgaaagaggagaatttggaattggtcttcctggaagtcctggt
ccagcaggccctacaggtatgcccggatcacctggaactccaggaccttctggaccttca
ggacctccaggcataggtggaaggtgtaatccagtggattgttattatcctctatcacat
ggtcgatcacggctcaatggaaagtga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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