KEGG   Xenopus tropicalis (tropical clawed frog): 100489404
Entry
100489404         CDS       T01011                                 
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
  KO
K16628  collagen type VII alpha
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
SSDB
Motif
Pfam: Collagen fn3 VWA VWA_2 Kunitz_BPTI Interfer-bind Pur_ac_phosph_N DUF1194
Other DBs
NCBI-GeneID: 100489404
NCBI-ProteinID: XP_012817132
UniProt: A0A803JG94
Position
4:complement(135718573..135854881)
AA seq 3095 aa
MRGFTALLVALHSLAFYPERSSAQQARCENVYDSDIVFIVDGSSSIGRANFRMIKSFMEG
LTIPFINVVSREGVRFGLVQYSDDPRTEFTFTTHRNGTELVQAIRNLGYKGGNTRTGTGL
RYAADNFFGPTIIRPNVPKVAILITDGKSQDDVDPPTQRLKSQGIKMFAVGIKNADSREL
TRVASTPTEDFFFYVNDFRILGSLLPVVTRKVCTSTGGVLITDSTSQTYTGPTNLVFSDQ
AANSMRIQWTSATGPVTGYKVLYVPLTGLGQQIPSELREITVTAGQTASVLQGLRAATEY
LVTVTALYANSIGESVSGRGRTLSPLGISNFRIVESGPSFLRLAWAPTGTEPPVGYRLTY
AIRGDSRTGEKTLGAGTTSDTLSDLKPNTEYVLSLYPRYQSQTGTPVTITGRTQRIEGVV
QLSLQDVTSQSMTATWNRVSGATGYRISWVSQSGEDAKDFDVGANVSSFFLQNLLPNTEY
TVSVSPLYGSIEGPAASTRVKTDSGIVQVLRTLADSPTSIQLTWNIIPEATGYRLEWRRA
RGGAKAPQVVNFPTSTNRYTITGLRPGTEYQITLFTLYDGREVATQATTSETETEPPVGI
VTNLRVIEAAGGRVRLAWTGVPRATEYRVVIRSADGTFERTRRVPGTQNTIEIDGLQDGV
SYSVLVSALVGRREGTAVPISVRIESSVVGSVTNLRVLDIRRGRIRLSWTGVPGATEYRI
LIRNSEDGSEETQVISGDETVYELKDVQEGITYVVRVTAVVGTREGNPVTINVRTESAVG
GVTNLRVLERGGNRLRIAWTGIARATGYRVTWRHSDGRQLSRTLAADVTSFDIEGLQANS
IYAIGVSALVGTSEGSPVTITAQTEDDSVGEVTNLRTVSTGETTIRIAWSPVPRATSYRI
TWRRSDGVEVSQIVTRDITSVDIPDLVPGTPYTIFVSAMIGSRESNPVAITAQTALEQVG
SVTSLQVLERNNIVRVTWVGVQGATSYKVSWIPVDGGPEQSREVLGNINSFELINVRPGV
RYTVKVTALIGTRQGSPVTASVTTPDVPSVTPVRDLRVSDVSQQRIRLNWSSVPGSTGYR
IYWRRADGGPETSRLVSRDERYIDIDNLQAGGRYEFRAVALFGSQESQAVSVFANSACGT
GRTDVVFLVHATQDNAYSEETVKNFLSKVMSSIGQLGPDATQVGLSAYSFRARPWILLNR
SSDLSTVLQQIRTIPFEEPSGTSIGAAIDFAKNYMFTTNYGRRNNVPGTLVVLADGPSGD
DVLEPARVMKDAGFKILAVGTNGADQEQLRRIVSRQSPRNVFFTRDSGNLNSLVDSLTGA
ICTVTPVEEPCTVQCPQGEKGQKGELGSAGRPGATGPPGEAGRNGIPGPPGPVGPRGPPG
EGTASRGQKGETGDPGTDGIPGSPGRPGNPGTPASPGSKGSQGERGYPGERGSPGPSGPK
GEKGVPGEPGEVINGGGGIPGRKGEPGIPGIPGQPGTPGQRGIPGTPGPPGPEGPSGSSG
LPGQSVKGEKGERGERGLPGSVDGAGGKGEPGSPGSPGAQGQAGPRGPTGLSGQKGEKGE
AGEGFPGAAGRTGDPGDRGPRGPPGEQGTKGDRGAPGQDGERGEKGERGPPGFQGLKGSP
GQNGLPGPSGPIGPSGGLGPRGDKGDQGAPGEPGKSTLGLPGGKGDKGSQGPAGPEGPKG
SRGDSGEKGERGPPGFGIPGQPGAKGDQGERGNVGLAGKTGQKGEPGEPGQNGEPGKSGP
PGQIGLRGKEGDRGEKGDEGTPGESGIPGKNGERGLRGLPGQRGLSGEKGDSGDPGESGR
NGTPGAPGTKGERGDPGTQGPQGPQGKPGTVESVVAGAKGEKGDAGDPGEHGMKGAKGEA
GANGLPGERGLEGLRGPPGPRGETGDRGTPGEKGERGPPGVDGRNGLDGKPGQPGSPGQR
GDAGKQGDPGRDGLPGLRGEQGPPGLIGPVGPPGIPGKQGEDGKPGFNGKNGEDGTPGED
GRKGDKGDVGPAGRDGRDGQKGTQGEPGSVGPAGPPGVPGNPGPIGPPGQGIPGLAGQAG
SKGDRGEQGAKGEQGRPGEMGARGEPGSTANVEKSLGILGIKVASLKDLMDTIDDGSGRP
ITAQMKIKGEPGVPGEKGAPGREGTMGFPGERGQKGERGDLGPAGPQGPPGRAIGERGPE
GPSGQTGDPGKPGIPGIPGKAGEPGEQGKAGDKGERGERGERGDDGKDGARGPVGPPGPK
GEVVEIIATRLPGERGLTGPRGIKGDPGADGEKGAKGDKGVDGQKGDRGDSGEKGRDGSP
GSVGERGLAGPEGKPGLPGFPGVLGRPGNPGESGQQGPPGIQGPTGIKGSPGEPGPSIRG
PPGPQGIAGPPGLPGPPGLMGPQGPPGVQGQVGESGKPGVPGRDGSPGKDGELGLPGKMG
MPGPPGLVGTRGEAGEPGTPGEFVAGPSGPKGEKGAPGNQAAGIPGEAGQKGDRGLPGAR
GEKGEAGRIGDTGDPGEDGSKGPPGPRGEKGQAGVGLPGPAGQIGPPGLKGDVGLPGPPG
PPGLQGIAGIPGQPGLRGEVGQLGPPGQQGERGLQGFAGREGNVGPQGQSGAPGAMGPAG
PPGVKGDKGDSGIGQLGPRGERGDPGSRGEDGRPGLEGDRGPPGLPGNRGERGDKGDPGP
IGLKGDKGETLTIEGPPGPRGNKGEMGERGIKGSEGEKGDKGDQGLHGEKGVKGEQGDKG
ATGFVGARGPGGQKGETGAFGEPGEPGLSGKDGVPGMRGEKGEPGIHGLKGIKGDRGMKG
LCGQDGEKGDKGDPGLHGRPGLSGRKGDSGEPGIPGHPGLPGKEGLVGGKGDRGMEGLQG
TKGDQGEKGDRGSVGMVGPAGPRGADGLPGPPGTIGPAGSKGPEGLQGQKGERGPAGEST
IGPRGIPGIPGERGEQGMIGVDGTKGDKGSPGMTEDEVRNFVRQEMSHHCACGGFVSNYP
SLPSSPSNKPRLVPVPALKFSHIDEDDGKALKVVVNTNDPEYEHVYTVEDYKEDLDEDGT
ESTLLADDVTIPMEPAANERRKRDASNQDPCTLPMEEGDCESYTLKWYYNQAVGECRLFV
YSGCGGNLNQFKEKKECEQQCNYRNTTAKSPPDGS
NT seq 9288 nt   +upstreamnt  +downstreamnt
atgagagggttcactgccctgttggtggcactacattcattagcattttatccggaaaga
agctcagcgcaacaagcaaggtgcgagaatgtctacgactcagatattgtcttcatcgtg
gatggatcctccagcattggtcgggcaaactttcgaatgatcaagtcctttatggaaggg
ttgaccattccctttataaatgttgtcagcagggaaggagtgcgctttggcttggtgcaa
tacagtgatgatcccagaacagagtttacatttaccactcaccggaatgggacagaactg
gttcaagctatccgaaacctgggctacaaaggaggaaacacaaggactggtactgggttg
agatatgcagcagataatttctttggacctaccatcatccgacctaatgttcctaaggtt
gctattttgataacagatggaaaatctcaggatgatgtagaccctccaactcaaaggcta
aaaagtcaaggaatcaaaatgtttgctgtgggaattaagaatgcagatagtcgggagttg
accagagtggcatctactccaactgaagatttcttcttctacgttaatgacttcagaatc
ctcggctccttactccccgtggtgactcggaaagtttgtaccagcaccggtggtgttttg
attactgattccacttcccaaacttacacaggacccaccaacctggttttctctgatcag
gcagccaactcaatgagaatccaatggacttcagcaactggtccagttactggctataaa
gttctgtacgttcctctcaccggtctgggacagcagattccatcagagctgagagaaatc
actgttactgcagggcaaactgcctccgtgctacagggtctgagagctgcaactgaatat
ttagttactgttacagctttatatgctaacagcattggggaatctgtgtctggcagagga
agaacgttgagtcctcttggcatatccaacttccgtatagtggagtctggtccctccttt
ctgaggctggcatgggcccctactggaacggaacccccagtgggttacaggctcacctac
gctataagaggtgacagtaggacaggagagaagaccttgggtgccggcacaacgtcagat
actctcagtgacctaaagcccaacactgaatatgttctcagcctttaccctcgataccag
agtcagactggaactcctgtaactattacaggccgcactcagcgaattgaaggggttgtg
cagctctccctccaggatgttacatcacaaagcatgactgccacgtggaatagggtcagt
ggcgccactggatatcgcatttcctgggtgtcccagtcaggtgaagatgcaaaggatttt
gatgtgggtgccaatgtaagctcattctttttacaaaacctcctacccaacacagagtat
acagtgtctgtaagcccactgtatggatcaatagagggtccggcagcttcaaccagagtt
aaaacagattcaggaatagtccaggttctgagaacattggcagacagccccacatcaatt
cagttgacatggaacatcattccagaggccactgggtataggctggaatggaggcgagct
agaggtggtgccaaggctcctcaggtggttaatttccccaccagcaccaacagatacacc
atcacaggcctgagaccgggaacagagtatcagatcaccctcttcactctgtatgatggg
cgagaggtggcaacccaagcaactacatcagagacagaaacagaacctccagttggcatt
gtcacaaacctgagggtgatagaggcagcaggcggaagagtccggttggcatggactgga
gttccaagagctacagaatacagagttgtgattcgcagtgccgatggaacgttcgagagg
accaggcgtgtccctgggacccagaacacaattgaaatcgatggccttcaggatggtgta
tcctacagtgtgctggtatctgcacttgttggcagacgagagggcacagcagtacctatc
agcgtccgaatagaatcctctgttgtcggctctgtaaccaatctgcgtgtgctggacata
agaagggggcgtattcgtctttcttggactggagtcccaggagccactgaatatcggata
cttatcaggaactcagaggatggttctgaggagactcaagttatctcaggggatgaaact
gtgtacgagctgaaggatgtacaagagggcatcacgtatgttgtgcgtgtaactgcagtt
gtgggaacgagagaaggaaatccagtgacaatcaacgtcaggacagagtcggcagtggga
ggagttacaaaccttcgagtgttggagagaggtggcaaccgcctgcgcattgcatggact
gggattgcccgggcaactggataccgggtcacctggagacatagcgatggtcgccagctg
agcagaaccctggccgccgatgtgacatcctttgacattgaaggtttgcaggccaactct
atctacgctataggcgtatcagctctggttggtacctcggagggcagccctgtgactata
acagcacagacagaagatgactctgtgggtgaagttaccaatctgagaactgtgagcact
ggagaaaccacaatcagaatcgcgtggagtccggttccaagggccacaagttacaggatc
acttggagacgtagtgatggtgttgaagtttcgcagatagtaactagagacatcacttcg
gtggatatccccgacttagttcctggcactccctatactatatttgtgtctgcgatgatt
ggtagcagggagagtaacccagttgccatcactgcccaaacagcgctggagcaggttgga
agtgtaaccagtctgcaggttcttgagaggaacaacattgtgcgcgtgacctgggtggga
gtacaaggagccacatcctacaaggtttcctggatccctgtagatggtggaccagagcaa
tccagggaggtgcttggaaacatcaattcgtttgaactgataaatgtgagaccaggagtg
agatacacagtaaaagttacagcactgataggcactcggcaaggatcacctgtcactgcc
agtgtcacaacaccggatgttccctcagtaactccagtaagagacctccgtgtatcagat
gtgtcacagcagcgcattagactcaattggagctctgttcctgggagcactgggtaccgt
atctactggagaagagctgatgggggtccggaaacaagccggctggtatcgagagatgag
agatacattgatatcgacaatttgcaagctggggggcgctatgaatttcgagctgtcgct
ttgtttggcagtcaggagagccaagctgtttctgtcttcgctaactccgcctgtggaacc
ggcaggacagatgttgtgttcttggtccatgcaacccaggacaatgcatacagtgaggag
actgtgaaaaatttcctttccaaggtgatgtcttctataggacagctgggccctgatgcc
acccaggttggcctcagtgcttacagctttagggctagaccttggatccttttgaatcgt
tccagtgatctgagcacagtcctccaacaaattcggaccattccttttgaagagccaagt
ggaacctctataggtgctgctatagactttgcgaagaactacatgtttacaacaaactat
ggaaggcgaaataatgtccctgggacactggttgtgttggcggatggaccctcgggagat
gatgtgttggaaccagccagagtcatgaaggacgcagggtttaaaatcctggcagttggg
acaaatggggcggatcaggagcagttacggcggatcgtctccagacaaagccctcggaat
gtctttttcaccagggattctgggaatcttaatagccttgtggacagccttacaggggct
atttgcacagtaaccccagtggaagagccttgtacagttcagtgtccacagggcgaaaag
ggacagaaaggagagctgggtagtgcagggcggccaggggcaactggacctcctggagag
gcgggacgcaatggtattccaggtccacctggtcctgttggtcctcgtggtcccccgggg
gaaggcacagcatcaaggggacagaaaggagaaactggggatccgggaactgacggtatc
ccaggaagcccaggccgtccaggaaaccctggtactccagcctctcctgggagtaaaggc
tcacaaggagagaggggatatccaggagaacgaggatctccaggcccatctggtcccaag
ggagaaaagggagtcccgggtgaaccaggggaagtaataaatggtggtggtggaattccc
gggagaaaaggagagccaggaattccaggaattccgggccagccaggaaccccgggacaa
agaggaattcctggaaccccagggccccctggaccagaaggaccaagtggttcttcagga
ctcccagggcagtctgtcaagggagagaaaggagaacgaggtgagagaggtctcccagga
tcagtcgatggagctggtggcaagggtgaaccaggaagtcctggatcacctggtgctcaa
ggtcaagcagggcctcggggtccaaccggcctttcagggcaaaaaggggaaaagggcgaa
gctggagaaggctttccgggggctgcagggaggacaggagatccaggagatcgaggaccc
agagggccacctggtgagcaaggtaccaagggtgaccgtggggctcctggccaggatgga
gaacgtggggaaaagggtgaacgtgggcctcctggatttcaaggactaaagggcagtcca
ggacaaaatgggttgcctggtccatcaggacccataggtccttcaggtggactgggacca
cgaggtgacaagggtgatcaaggtgctcctggggaacctgggaaatcaactttgggtctt
ccgggaggtaaaggcgataagggaagccaaggtcccgctggaccagaaggtccaaaaggt
tcaagaggagattcaggggagaaaggcgagcgaggtccaccaggatttggaatccctggg
cagccaggagcaaagggagatcaaggagaaaggggcaatgtcggccttgctggaaagaca
ggacaaaagggagagcctggagaaccgggacagaatggggaaccaggaaaatctgggcca
ccagggcagattggtcttcggggcaaagaaggagatcgtggagaaaagggagatgaagga
acaccgggtgaatctggaataccaggaaagaatggagaaagaggcctaaggggtcttcca
ggacaaaggggcctttcaggagaaaagggggattctggggatcccggggagtctggaagg
aatggaacccccggagcccctggcactaaaggtgaacgaggtgatccaggaacacaaggt
cctcaaggaccacaaggaaagccaggcaccgtggaatctgtggttgctggagcaaaaggg
gagaagggtgatgctggcgaccctggtgagcatggcatgaaaggcgcaaagggagaagct
ggtgcaaatggactcccaggagagaggggattagaaggactgaggggccctccaggacct
cggggagagacgggggatcgtgggactccaggtgaaaagggtgaacgtggtcctccgggt
gtagatggaaggaatggtttggatgggaaaccaggacagccaggctccccaggccagaga
ggagatgcaggcaagcaaggtgatcctggaagagatgggctacctggacttagaggagag
cagggccccccgggactgattgggcctgttggaccaccaggaatacctggtaaacaagga
gaagatggaaaaccaggctttaatggtaaaaatggagaagatggaactccaggggaagat
ggaagaaagggggacaaaggtgacgtgggtcctgctggccgagatggtcgagatggtcaa
aaaggaacacagggggaaccaggatcagtaggtcccgccggaccaccgggtgtcccaggg
aatccaggaccaattggtcctccaggccagggaataccaggactagctggtcaagcggga
tcgaagggtgatcgaggagaacagggtgcaaagggtgaacagggtaggcctggtgaaatg
ggagctagaggagagcctggaagcaccgctaatgttgaaaagtccctcggcattttagga
attaaggttgcttcactaaaagatctcatggacaccattgatgatggctctggacgtccc
attaccgcacaaatgaagataaaaggagaaccaggagttcctggggagaagggtgcccca
gggagagaaggaacaatgggctttcctggagaaagaggacagaaaggagaaaggggagat
cttgggcctgcagggccccaagggccaccaggacgggctattggagaaagaggtcctgaa
ggtccatctggacaaactggggatccaggcaaacctgggattccaggaataccgggaaag
gcaggagaacctggagagcaagggaaggctggagacaaaggagagagaggagaacggggt
gaacgaggtgatgatggtaaagatggcgccagggggcctgttggaccaccgggaccaaag
ggtgaagttgtagaaattattgccaccagactgcctggagagagaggattaacaggtcca
agaggtatcaagggtgatccaggcgcagatggagagaaaggagccaaaggagataagggg
gtagacggacaaaaaggagatagaggggactctggtgaaaagggcagagatggatctcca
ggatctgtaggagagagaggactggcagggccagaaggaaagccgggtttgcctggcttc
cccggagtgctcggacgaccgggaaacccaggagaatcaggtcagcagggtccgccaggt
attcagggtcccactggaataaagggcagcccaggggaacccggccccagcatacgggga
ccacctggtcctcaaggtattgccggaccccccggattacctggtccaccaggccttatg
ggacctcaggggcctcctggagttcaaggacaagtgggcgaatcaggaaagcctggggtc
ccaggaagagacggctcaccaggcaaagatggggaacttgggcttccaggaaaaatgggt
atgccgggcccacctggtcttgttggaaccagaggagaagcaggggagccaggaactcct
ggggagtttgttgctggcccctctggaccgaaaggagagaagggggctcccggtaaccag
gcagcaggaataccaggagaagctgggcagaaaggagacagaggacttccaggcgcaaga
ggggagaagggggaagctggaagaataggagacactggagatccaggagaagatggttcc
aaagggccccctggtccaagaggtgaaaaggggcaagctggagttgggctacctggaccg
gctggacaaattggaccaccaggcttgaagggagatgttggtttgcccgggccccctgga
cctcctggcctgcaagggatagcagggatacccggtcagccaggattaagaggagaagtc
ggacagctaggtccccctggccaacaaggggagaggggcttgcagggatttgcgggaaga
gaaggaaatgtgggaccacaagggcaatctggggcacctggagcgatgggccctgcagga
ccaccaggggtgaaaggtgataagggtgactcaggaattggccagttaggccctagagga
gaaagaggtgacccaggttcaaggggagaggatggtcgcccggggctggaaggagaccgt
ggcccaccaggccttcctggaaatagaggagagcgaggagacaagggtgacccaggcccg
ataggacttaaaggggacaagggagaaacactcactatcgagggacctcctggtccaagg
ggaaacaaaggagagatgggggaacgaggaataaaaggttcagagggggaaaagggggac
aaaggagatcaaggtctgcatggagaaaagggagtcaaaggtgaacaaggagacaaaggt
gccactggctttgtaggggctcgtggtcctggtgggcaaaaaggagagactggtgccttt
ggagaaccaggagagcctggcttgtcaggcaaggatggagtcccaggaatgcgaggagaa
aaaggagaacctggtatccatgggctaaaggggataaagggagatcgtggtatgaaggga
ctctgtgggcaagatggtgaaaaaggagataagggtgacccaggactacatggacgtcct
ggactatcaggaaggaaaggagattctggtgaaccaggaattccaggacatccaggcttg
cctggaaaggaaggacttgttggaggcaagggagatagaggcatggaaggactgcaggga
acaaagggagaccaaggagaaaaaggtgacaggggttctgttggaatggttggccctgct
ggcccccggggtgctgatgggctaccagggcctcctggtaccataggtcctgctggttca
aagggtccagaaggtcttcagggacaaaagggtgagaggggccctgctggggaatcaact
ataggaccacggggaatcccaggaatcccaggagaacgaggagaacagggtatgattgga
gtagatggtacaaaaggagacaaggggagtccaggcatgacggaagatgaagttcgtaat
tttgtccgtcaggaaatgagccatcactgcgcctgtggaggttttgtttccaactatcca
tctctcccatcgtctccatctaacaaaccacgtcttgtcccagtcccagccctaaagttc
tctcatattgatgaagatgatggaaaggcgttgaaggtggtggttaacaccaatgatcct
gaatatgaacatgtatacactgtagaggattacaaggaagacttggacgaggatggaaca
gagagtactctattagctgatgatgtgacaatacctatggaacccgctgcaaatgagaga
aggaaaagagatgcatctaatcaagatccatgcactttgcctatggaagaaggggactgt
gaaagctacaccctgaaatggtattataaccaagccgttggagaatgtcgcctatttgtt
tacagtggctgcggtggaaacctcaatcaatttaaagagaagaaagaatgtgagcagcaa
tgtaattacagaaacacaacagctaaatctccgccagatggaagctaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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