KEGG   Xenopus tropicalis (tropical clawed frog): 100491300
Entry
100491300         CDS       T01011                                 
Symbol
rbck1
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
  KO
K10630  RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:2.3.2.31]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04217  Necroptosis
xtr04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    100491300 (rbck1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    100491300 (rbck1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    100491300 (rbck1)
Enzymes [BR:xtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.31  RBR-type E3 ubiquitin transferase
     100491300 (rbck1)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   RBR proteins
    100491300 (rbck1)
  Multi subunit Ring-finger type E3
   LUBAC complex
    100491300 (rbck1)
SSDB
Motif
Pfam: Sharpin_PH zf-RanBP IBR ubiquitin zf-C3HC4 zf-RING_5 zf-RING_2 zf-RING_UBOX
Other DBs
NCBI-GeneID: 100491300
NCBI-ProteinID: XP_031759577
Xenbase: XB-GENE-958963
UniProt: A0A6I8QEX5
Position
6:151328708..151357716
AA seq 671 aa
MASKVPVPLPTVLMSVRAWLGAPGREAVQLQLLLGPDSVRDFRLSLRGLTGTTVTDFKLR
DISYEQKSAKCHELQVPGLPGSSLEFSFDEEREGQKWWTVLSSSLREARKDVPNHGNGGA
KPPVLDRPAMPPNKNSYRSLSAEAPEMPIDLCTKEELGLRLSRAIECGDQELAAQFAAAL
AKQKVSLQIQLKPSCYPKTEICMKVGVEDASDSVNISTYVQPQTTISLLKQQIFREHQFH
PSIQRWIIGQCLCSDDRTVASYGIKRDGDTAFLYLLTAKQAKLGAQDPYPRVNPAQPGVS
AADKPRANTLPHRPAPRPSVSQRVERAEQANIAEVANKLHLEMESLNLSAAPPTQAGWAC
SDCTFINKPTRPGCEMCSAPRPTAYVVPEEYKPDDKERKRLQMEQDSLQQYKKALEEERS
QNFQHLLQLDNEVLIPNQEPIDCLICFSEVPVGGGVLLRECLHSFCRECLRQLVNCCEEP
EVSCPFRDETYACNSKLQQREIRALVAQEEYSRFLERGLVVAESRSHDSYHCRTADCRGW
CVYEDSVNEFTCPICHAQNCLTCKAIHDGMNCREYQDDLRIRAQNDAAARQTNDMLKTLV
QTGEAMYCPVCQIIVQKKDGCDWIRCTMCQTEICWVTKGPRWGPQGPGDTSGGCQCNING
KKCDPRCQNCH
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggcgagcaaagtgccagtcccgctgcccacggtgctgatgtccgtacgcgcctggctg
ggggccccggggcgggaggcggtgcagttacagcttctcctgggaccggacagtgtgcgg
gatttccgactctcattgcggggcctgacgggaacgactgtgacagactttaagctgaga
gacatctcctacgagcagaagagcgctaagtgccacgagttgcaggttccggggctcccg
ggcagctccctagagttctcctttgatgaagaacgagaaggccagaaatggtggactgtg
ctgagcagctctctccgagaagcaaggaaagatgtgcccaatcacggcaacggaggggcc
aaacctcctgtactcgataggccagcgatgccgccgaacaagaattcctacaggagcctc
tcagcggaggcaccggagatgcccatagacttatgcacaaaggaagaattaggcctccgc
ctcagcagagccatagagtgtggggaccaggaactggcggcccagtttgccgcggcgctg
gcaaagcagaaggtttccctccagatccagttaaagccgtcctgctacccgaaaacggaa
atctgtatgaaggtgggggtcgaggacgcgtcggattcggtgaacatctcaacgtacgtt
cagccccaaactaccatctccttgctcaaacagcagatattccgggagcaccagttccac
ccgagcattcagcggtggatcattggccaatgtctgtgctcggatgacaggacagtcgct
tcctatggaataaaaagagacggggacacggcctttctctacctgttaaccgccaagcag
gccaaactgggcgcgcaggatccgtatccgagggttaaccccgcgcagcctggcgtctct
gcagctgataaaccaagagccaatacccttccgcaccggccagcaccaaggcccagtgtc
tctcagagggtggagcgggcggaacaagcaaatatagcggaggtggccaataaattgcac
ttggaaatggaatcactgaatctgtcggcagctcctcctacccaggccggctgggcttgt
tctgactgcaccttcatcaataagccgaccaggccgggctgtgagatgtgcagcgccccc
cggcccacagcctacgtggtcccagaggaatataaacccgacgataaggagcggaagcga
ctgcaaatggagcaggacagtttgcagcagtacaaaaaggccttggaggaggagagatct
cagaacttccagcaccttctgcagctggacaacgaggttctgatcccaaaccaggagccc
attgattgtctcatttgcttctcagaggtcccagtagggggcggtgttctgctgagagag
tgtctgcacagcttctgcagggaatgtctgcgccaactggtgaactgctgcgaggaaccc
gaggtgtcgtgtcccttccgagatgagacctacgcgtgtaacagcaaactgcagcagcga
gagatccgcgccttagtggcgcaggaggagtacagtcggttcctggagagggggctggtg
gttgccgagagcagaagccatgacagttaccattgccgcacagccgactgccggggttgg
tgcgtttatgaagactccgtcaatgagttcacctgccccatttgccacgcccagaactgc
ctcacctgcaaggccatacacgacgggatgaattgccgcgagtaccaagacgatttgcgg
atccgagcgcagaacgacgcagccgccaggcagaccaatgacatgctcaagacgctggtg
cagaccggggaggcgatgtactgccccgtgtgtcagatcattgtacagaagaaggacgga
tgtgattggatccgctgcaccatgtgtcagactgagatctgctgggtgacgaagggcccg
cgctgggggccacagggccccggagacacgtcgggaggctgccagtgcaacatcaatggg
aagaaatgtgacccccggtgtcagaactgtcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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