KEGG   Xenopus tropicalis (tropical clawed frog): 100494715
Entry
100494715         CDS       T01011                                 
Symbol
nphp1
Name
(RefSeq) nephrocystin-1
  KO
K19657  nephrocystin-1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:xtr03037]
    100494715 (nphp1)
Cilium and associated proteins [BR:xtr03037]
 Primary cilia and associated proteins
  Nephronophthisis-related proteins
   100494715 (nphp1)
SSDB
Motif
Pfam: SH3_1 SH3_2 SH3_9 Nop25
Other DBs
NCBI-GeneID: 100494715
NCBI-ProteinID: XP_002940386
Xenbase: XB-GENE-486283
UniProt: A0A6I8S7R4
Position
5:40492579..40533111
AA seq 685 aa
MSVRKARGPLQNTLRVTDDLKRQFDDLLRETLEKDVLNPVAKKEFYQRCVHLNTLVEKNR
EALDKLKKADEPAPVGNYEQRKQEEEQRLTKLSHQLQELAKTLQQGNKQKDSHQTEEVSN
DEEESGEEVEEEEEEDEEEEEEDDDEEEEEEEDELDLTMKEYITLGDFQAQQKDDLTFKK
GQVLHILDKKLDGWWIAQDSKGNKGLVPKTYLQVYKSGDPNLDQSEEESEEDVEETEDDK
TVTMQSKQTEDTVSQLSSSRKIKEMSSVDGLVTMGTIPSGFRSSTLAQLLNQGEQYRTYM
YLQPDLNPSQLAFKDLLWDREACGIQSLPSRISLILTLWSCKMIPLPGASIQILSRHVRL
CLFDGAKVWSNIHTVRASWLPKNSRTWTFSPRVTGILPSILDGDCFVRSGCHSPEIGILF
ELGVTYIRNSTGERGELSCGWAFLKLFDTNGIPMPARTYELTLYGGTPYERGVEVDPSVA
RRVNTGVFHQLRTQRKQPRLLVKLRTLNTTQRNMLNMLPQTIIGSSSHLPVLVYYRQILG
DVLLKERKSMQNSDLICHPLLATFPRLMEQPDILDALRSGWAEKENSMKRSEKRDKEFMK
NAFIHVYHNIAYPLLESTVLQESKGAEDETEAARWKVIAEFLRQNREKHGSQHFLLSPDN
LHKPFDISEITYDFLDAAKKSTVLL
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgtctgtcagaaaggcaagagggcccctgcagaacaccctgagggtaactgatgacctg
aagagacagtttgatgatttgctgcgcgaaacattagaaaaagatgttttaaatcctgtg
gctaaaaaggaattttaccaaagatgtgtacacctgaacacccttgtagaaaaaaacaga
gaagctcttgataagttgaaaaaagctgatgaaccagcccctgtagggaactatgagcag
aggaagcaagaagaagaacaaagactgactaaactttctcatcagctgcaggagcttgca
aagactctgcaacagggaaataaacagaaggacagccaccagacagaagaggtcagcaat
gatgaagaagaaagtggagaggaagtagaagaagaggaagaagaagatgaggaggaggaa
gaagaagatgatgatgaggaagaggaggaggaagaagatgaactcgacttaaccatgaaa
gagtacattacattgggagattttcaggcccagcaaaaagacgatttaacttttaagaaa
ggccaagtactacatattctggataaaaaacttgacggctggtggattgctcaagactct
aaaggaaacaaaggccttgtaccaaagacatacttacaggtgtacaaaagtggagatcct
aacctagatcaaagtgaggaggaaagtgaagaagatgtagaagagacagaagatgacaaa
acagttaccatgcagagtaaacaaacagaagataccgtttcacagctaagttcttctaga
aagatcaaagagatgagctcagttgatggattggtgacaatgggcacaataccttctggg
tttcgttcctcaaccctggcacaacttttaaaccaaggggaacagtacagaacatatatg
tacctgcagcctgatcttaacccatcacagctggcttttaaagatttgctatgggacaga
gaagcatgtggtattcaatcattaccaagccgcatctctttgattttgaccttgtggagc
tgtaaaatgatacctctgcctggggccagcattcagatccttagcaggcatgtgagactc
tgcctgtttgatggtgctaaggtctggagcaatattcatacagtaagagcttcatggcta
cccaaaaattcaagaacatggacgttttctcctagggtcaccggtattcttcccagcatc
ctcgatggcgattgttttgtgagatctggctgccattctccagagatcggaattctgttt
gaacttggagtcacctatatccgtaactcaaccggtgagcgaggagagctgagctgtggc
tgggcttttttaaagctttttgataccaatgggattcccatgcctgcaaggacatatgag
cttaccttgtatgggggaactccctatgaaagaggagtcgaagtagatccatctgttgca
agaagagtaaacacaggcgttttccatcagttgaggacccagagaaagcagcctcggcta
ctcgtgaaactcagaactctaaacaccacacagagaaacatgctaaacatgcttcctcaa
acaataattggtagcagcagccacctgcctgtgctggtctactatcggcagattctaggg
gatgtgcttctgaaagaaagaaaaagtatgcagaattcagatctcatttgccatccttta
ctggccacatttcccaggctaatggagcagcctgatattcttgatgcactcaggagcggg
tgggcagagaaagaaaattccatgaaaagatcagaaaagagggacaaagagttcatgaaa
aatgccttcatccatgtttatcacaacattgcctacccgcttctggagtccacagtcctg
caggagtccaaaggggcagaagatgaaacagaagctgcccggtggaaagtgatcgctgag
ttcctcagacaaaaccgtgagaaacatggatcccaacacttcctgttgtctccagacaac
ctccacaagccatttgatatctccgagataacgtatgatttccttgatgcggcaaagaag
tctactgtattgttatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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